Aliases for ENSG00000260277 Gene

Subcategory (RNA class) for ENSG00000260277 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260277 Gene

  • Novel Transcript, Antisense To C16orf52 And VWA3A 5
  • NONHSAG018859 92
  • HSALNG0110162 167
  • Lnc-PDZD9-1 168
  • AC009019.1 5

External Ids for ENSG00000260277 Gene

Summaries for ENSG00000260277 Gene

GeneCards Summary for ENSG00000260277 Gene

ENSG00000260277 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260277 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260277 Gene

Genomics for ENSG00000260277 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260277 Gene

Promoters and enhancers for ENSG00000260277 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J022092 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 500.7 +0.1 101 1.4 FOXK2 EP300 JUND ZIC2 RFX1 CHD1 BHLHE40 ATF2 MXI1 SIN3A ENSG00000260277 LOC105371129 VWA3A
GH16J022094 Enhancer 0.3 Ensembl 505.7 -1.5 -1516 0.4 SPI1 ENSG00000260277 LOC105371129 RF00017-2011 VWA3A
GH16J022296 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 19.5 -205.2 -205199 3.4 RXRA EP300 FOXK2 HNRNPK ZBTB40 ZNF217 CTCF ZSCAN5C SIN3A NRF1 POLR3E TRL-AAG2-4 MOSMO NPIPB4 NPIPB3 RRN3P1 NPIPB5 ENSG00000260306 SMG1P3 MFSD13B
GH16J022194 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.1 -103.1 -103062 1.9 EP300 ZBTB40 ZNF217 CTCF SIN3A NRF1 POLR2G SP1 NCOR1 TEAD4 TRL-TAG3-1 NPIPB3 MOSMO NPIPB4 NPIPB5 SMG1P3 ENSG00000260635 SMG1P1 SMG1P4 POLR3E
GH16J021505 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 11.2 +581.9 581905 8.6 ZBTB40 ZNF217 ZSCAN5C NCOR1 ZFX ZNF639 ZNF10 ZIC2 KDM6A TCF7 ENSG00000287809 piR-31901-001 piR-43553 piR-61761-001 piR-51913 ENSG00000260277 REXO5 MFSD13B NPIPB5 ENSG00000260306
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260277 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260277 Gene

Genomic Locations for ENSG00000260277 Gene
chr16:22,083,256-22,092,485
(GRCh38/hg38)
Size:
9,230 bases
Orientation:
Minus strand
chr16:22,094,577-22,103,552
(GRCh37/hg19)
Size:
8,976 bases
Orientation:
Minus strand

Genomic View for ENSG00000260277 Gene

Genes around ENSG00000260277 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260277 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260277 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260277 Gene

Proteins for ENSG00000260277 Gene

Post-translational modifications for ENSG00000260277 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260277 Gene

Domains & Families for ENSG00000260277 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260277 Gene

Function for ENSG00000260277 Gene

Phenotypes From GWAS Catalog for ENSG00000260277 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260277 Gene

Localization for ENSG00000260277 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260277 Gene

Pathways & Interactions for ENSG00000260277 Gene

PathCards logo

SuperPathways for ENSG00000260277 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260277 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260277 Gene

Drugs & Compounds for ENSG00000260277 Gene

No Compound Related Data Available

Transcripts for ENSG00000260277 Gene

mRNA/cDNA for ENSG00000260277 Gene

5 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260277 Gene

No ASD Table

Relevant External Links for ENSG00000260277 Gene

GeneLoc Exon Structure for
ENSG00000260277

Expression for ENSG00000260277 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260277 Gene

genes like me logo Genes that share expression patterns with ENSG00000260277: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260277 Gene

Orthologs for ENSG00000260277 Gene

Evolution for ENSG00000260277 Gene

ENSEMBL:
Gene Tree for ENSG00000260277 (if available)
TreeFam:
Gene Tree for ENSG00000260277 (if available)

No data available for Orthologs for ENSG00000260277 Gene

Paralogs for ENSG00000260277 Gene

No data available for Paralogs for ENSG00000260277 Gene

Variants for ENSG00000260277 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260277 Gene

Disorders for ENSG00000260277 Gene

No disorders were found for ENSG00000260277 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260277 Gene

Publications for ENSG00000260277 Gene

No publications were found for ENSG00000260277 Gene.

No data available for Mastermind for ENSG00000260277 Gene

Products for ENSG00000260277 Gene

Sources for ENSG00000260277 Gene