Aliases for ENSG00000260271 Gene

Subcategory (RNA class) for ENSG00000260271 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260271 Gene

  • Novel Transcript 5
  • HSALNG0051900 167
  • HSALNG0051903 167
  • NONHSAG044356 92
  • Lnc-GJA10-23 168
  • Lnc-GJA10-4 168
  • AL132996.1 5

External Ids for ENSG00000260271 Gene

Previous GeneCards Identifiers for ENSG00000260271 Gene

  • GC06P091055
  • GC06P090345
  • GC06P090320

Summaries for ENSG00000260271 Gene

GeneCards Summary for ENSG00000260271 Gene

ENSG00000260271 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260271 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260271 Gene

Genomics for ENSG00000260271 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260271 Gene

Promoters and enhancers for ENSG00000260271 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J090292 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.0 18 5.3 HNRNPK NRF1 GTF2E2 JUND TEAD4 ZIC2 POLR2A ZNF423 ZBTB26 TRIM28 BACH2 ENSG00000260271 lnc-GJA10-23 lnc-MAP3K7-3 MDN1
GH06J090283 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -10.1 -10079 3.5 CTCF ZSCAN5C TCF12 SP1 JUND TEAD4 FOS EP300 ZIC2 REST BACH2 ENSG00000226455 MAP3K7 MDN1 piR-39701-054 ENSG00000260271 lnc-MAP3K7-3
GH06J090301 Enhancer 0.7 Ensembl dbSUPER 0.4 +7.4 7393 2.2 CTCF MYNN RAD21 SPI1 SMC3 ZFP36 ZNF366 IKZF1 POLR2A ENSG00000260271 MIR4464 lnc-GJA10-23
GH06J090300 Enhancer 0.4 Ensembl dbSUPER 0.7 +5.0 4994 0.2 ZNF335 ENSG00000260271 lnc-GJA10-23 MIR4464
GH06J090350 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +56.3 56294 4.4 EP300 TARDBP RUNX1 CTBP1 FOXA2 NEUROD1 ZNF316 TRIM24 CEBPG MAX ENSG00000252891 GJA10 RF00017-5678 LOC105377891 ENSG00000260271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260271 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260271 Gene

Genomic Locations for ENSG00000260271 Gene
chr6:90,295,507-90,363,912
(GRCh38/hg38)
Size:
68,406 bases
Orientation:
Plus strand
chr6:91,054,938-91,072,351
(GRCh37/hg19)
Size:
17,414 bases
Orientation:
Plus strand

Genomic View for ENSG00000260271 Gene

Genes around ENSG00000260271 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260271 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260271 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260271 Gene

Proteins for ENSG00000260271 Gene

Post-translational modifications for ENSG00000260271 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260271 Gene

Domains & Families for ENSG00000260271 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260271 Gene

Function for ENSG00000260271 Gene

Phenotypes From GWAS Catalog for ENSG00000260271 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260271 Gene

Localization for ENSG00000260271 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260271 Gene

Pathways & Interactions for ENSG00000260271 Gene

PathCards logo

SuperPathways for ENSG00000260271 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260271 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260271 Gene

Drugs & Compounds for ENSG00000260271 Gene

No Compound Related Data Available

Transcripts for ENSG00000260271 Gene

mRNA/cDNA for ENSG00000260271 Gene

10 RNACentral transcripts :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260271 Gene

No ASD Table

Relevant External Links for ENSG00000260271 Gene

GeneLoc Exon Structure for
ENSG00000260271

Expression for ENSG00000260271 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260271 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260271 Gene

This gene is overexpressed in Testis (x6.0).
genes like me logo Genes that share expression patterns with ENSG00000260271: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260271 Gene

Orthologs for ENSG00000260271 Gene

Evolution for ENSG00000260271 Gene

ENSEMBL:
Gene Tree for ENSG00000260271 (if available)
TreeFam:
Gene Tree for ENSG00000260271 (if available)

No data available for Orthologs for ENSG00000260271 Gene

Paralogs for ENSG00000260271 Gene

No data available for Paralogs for ENSG00000260271 Gene

Variants for ENSG00000260271 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260271 Gene

Disorders for ENSG00000260271 Gene

No disorders were found for ENSG00000260271 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260271 Gene

Publications for ENSG00000260271 Gene

No publications were found for ENSG00000260271 Gene.

No data available for Mastermind for ENSG00000260271 Gene

Products for ENSG00000260271 Gene

Sources for ENSG00000260271 Gene