Aliases for ENSG00000260234 Gene

Aliases for ENSG00000260234 Gene

  • CLRN1 And FAM188B2 Readthrough Transcript 5
  • Uncharacterized Protein 13
  • AC020636.2 5

External Ids for ENSG00000260234 Gene

Previous GeneCards Identifiers for ENSG00000260234 Gene

  • GC03M150600

Summaries for ENSG00000260234 Gene

GeneCards Summary for ENSG00000260234 Gene

ENSG00000260234 is a Protein Coding gene.

Additional gene information for ENSG00000260234 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260234 Gene

Genomics for ENSG00000260234 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260234 Gene

Promoters and enhancers for ENSG00000260234 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J150971 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.3 -30.6 -30634 2.5 USF1 JUND FOS REST FOSL2 JUN FOSL1 USF2 BHLHE40 MIER2 CLRN1 lnc-CLRN1-1 ENSG00000260234 ENSG00000243273 CLRN1-AS1
GH03J150910 Enhancer 0.8 Ensembl ENCODE 0.3 +29.4 29357 4.3 EP300 MEF2C RBM25 ZNF316 MAFF MAFK POLR2A SPI1 BCOR BATF MED12L MINDY4B ENSG00000243273 ENSG00000260234 CLRN1-AS1
GH03J150926 Enhancer 0.7 ENCODE 0.4 +15.8 15834 0.2 CTCF REST RAD21 CTBP1 SMC3 MYC TCF12 KLF13 ZNF654 SIN3A MINDY4B ENSG00000243273 MED12L ENSG00000260234 CLRN1 CLRN1-AS1
GH03J150925 Enhancer 0.5 FANTOM5 0.4 +16.2 16184 0.2 CTCF CTBP1 SIN3A XRCC5 RBM39 RNF2 CREB1 TRIM22 ZNF444 MINDY4B ENSG00000243273 CLRN1 CLRN1-AS1 MED12L P2RY14 ENSG00000260234
GH03J150888 Promoter/Enhancer 0.8 Ensembl ENCODE 0.2 +51.7 51677 3.1 CEBPG CEBPB SPI1 HLF PKNOX1 CTCF ENSG00000243273 CLRN1-AS1 ERICH6-AS1 MED12L lnc-MINDY4B-1 MINDY4B piR-32651-009 ENSG00000260234
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260234 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260234 Gene

Genomic Locations for ENSG00000260234 Gene
chr3:150,882,997-150,941,743
(GRCh38/hg38)
Size:
58,747 bases
Orientation:
Minus strand
chr3:150,600,784-150,659,530
(GRCh37/hg19)
Size:
58,747 bases
Orientation:
Minus strand

Genomic View for ENSG00000260234 Gene

Genes around ENSG00000260234 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260234 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260234 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260234 Gene

Proteins for ENSG00000260234 Gene

  • Protein details for ENSG00000260234 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BU62-H3BU62_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    H3BU62

    Protein attributes for ENSG00000260234 Gene

    Size:
    49 amino acids
    Molecular mass:
    5402 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ENSG00000260234 Gene

Post-translational modifications for ENSG00000260234 Gene

No Post-translational modifications

Other Protein References for ENSG00000260234 Gene

No data available for DME Specific Peptides for ENSG00000260234 Gene

Domains & Families for ENSG00000260234 Gene

Protein Domains for ENSG00000260234 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with ENSG00000260234: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260234 Gene

Function for ENSG00000260234 Gene

Phenotypes From GWAS Catalog for ENSG00000260234 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260234 Gene

Localization for ENSG00000260234 Gene

Gene Ontology (GO) - Cellular Components for ENSG00000260234 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ENSG00000260234: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ENSG00000260234 Gene

Pathways & Interactions for ENSG00000260234 Gene

PathCards logo

SuperPathways for ENSG00000260234 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260234 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050957 equilibrioception IBA --
genes like me logo Genes that share ontologies with ENSG00000260234: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260234 Gene

Drugs & Compounds for ENSG00000260234 Gene

No Compound Related Data Available

Transcripts for ENSG00000260234 Gene

mRNA/cDNA for ENSG00000260234 Gene

3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260234 Gene

No ASD Table

Relevant External Links for ENSG00000260234 Gene

GeneLoc Exon Structure for
ENSG00000260234

Expression for ENSG00000260234 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260234 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260234 Gene

This gene is overexpressed in Whole Blood (x20.8), Pituitary (x15.6), and Adrenal Gland (x5.0).
genes like me logo Genes that share expression patterns with ENSG00000260234: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260234 Gene

Orthologs for ENSG00000260234 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000260234 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 31
  • 24 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 21 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Clrn1 31
  • 21 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 19 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 31
  • 3 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 31
  • 17 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 31
  • 6 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii clrn1 31
  • 14 (a)
OneToMany
Species where no ortholog for ENSG00000260234 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000260234 Gene

ENSEMBL:
Gene Tree for ENSG00000260234 (if available)
TreeFam:
Gene Tree for ENSG00000260234 (if available)

Paralogs for ENSG00000260234 Gene

No data available for Paralogs for ENSG00000260234 Gene

Variants for ENSG00000260234 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260234 Gene

Disorders for ENSG00000260234 Gene

No disorders were found for ENSG00000260234 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260234 Gene

Publications for ENSG00000260234 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 13 54

No data available for Mastermind for ENSG00000260234 Gene

Products for ENSG00000260234 Gene

Sources for ENSG00000260234 Gene