Aliases for ENSG00000260209 Gene

Subcategory (RNA class) for ENSG00000260209 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260209 Gene

  • Novel Transcript 5
  • NONHSAG009968.2 91
  • HSALNG0087966 164
  • AP000842.3 5
  • Lnc-PUS3-1 165

External Ids for ENSG00000260209 Gene

Previous GeneCards Identifiers for ENSG00000260209 Gene

  • GC11M125742
  • GC11M125873

Summaries for ENSG00000260209 Gene

GeneCards Summary for ENSG00000260209 Gene

ENSG00000260209 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260209 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260209 Gene

Genomics for ENSG00000260209 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260209 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J125886 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 600.7 -0.1 -129 3 SP1 PRDM10 IKZF1 NFKBIZ KDM1A POLR2A BACH1 FOS TARDBP FOXA1 ENSG00000260209 JX952209 piR-35491 ENSG00000255062 TMEM218 STT3A DDX25 CHEK1 PUS3 HYLS1
GH11J125874 Promoter 1 EPDnew Ensembl 0.4 +13.5 13458 0.6 IKZF1 CTCF BRD9 RAD21 MNT DMAP1 ERF ATF1 PATE2 DDX25 PUS3 PATE4 CHEK1 HYLS1 ENSG00000260209 piR-30091-036
GH11J125875 Enhancer 0.7 ENCODE 0.4 +12.9 12871 0.2 CTCF IKZF1 FOXA1 REST RAD21 BRD9 TRIM22 SMC3 MYC SAP130 DDX25 PUS3 PATE4 CHEK1 HYLS1 ENSG00000260209 piR-30091-036
GH11J125873 Enhancer 0.5 Ensembl 0.4 +15.3 15271 0.2 CBX3 TRIM28 ZEB2 FOS BHLHE40 PUS3 DDX25 PATE4 piR-30091-036 HYLS1 ENSG00000260209
GH11J125842 Enhancer 0.3 Ensembl 0.3 +45.1 45071 0.6 SPI1 MAFK CHEK1 PATE4 HSALNG0087966 HYLS1 ENSG00000260209
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260209 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260209 Gene

Genomic Locations for ENSG00000260209 Gene
chr11:125,824,517-125,887,572
(GRCh38/hg38)
Size:
63,056 bases
Orientation:
Minus strand
chr11:125,742,926-125,744,423
(GRCh37/hg19)
Size:
1,498 bases
Orientation:
Minus strand

Genomic View for ENSG00000260209 Gene

Genes around ENSG00000260209 on UCSC Golden Path with GeneCards custom track
ENSG00000260209 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260209 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260209 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260209 Gene

Proteins for ENSG00000260209 Gene

Post-translational modifications for ENSG00000260209 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260209 Gene

Domains & Families for ENSG00000260209 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260209 Gene

Function for ENSG00000260209 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260209 Gene

Localization for ENSG00000260209 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260209 Gene

Pathways & Interactions for ENSG00000260209 Gene

PathCards logo

SuperPathways for ENSG00000260209 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260209 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260209 Gene

Drugs & Compounds for ENSG00000260209 Gene

No Compound Related Data Available

Transcripts for ENSG00000260209 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260209 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014C965_9606 lncRNA 1080 3

Ensembl: ENST00000569238 (view in UCSC) ,

LNCipedia: lnc-PUS3-1:1,

NONCODE: NONHSAT024979.2,

URS0000414019_9606 lncRNA 808 3

Ensembl: ENST00000564354 (view in UCSC) ,

LNCipedia: lnc-PUS3-1:2,

NONCODE: NONHSAT024978.2,

URS00008B68B1_9606 lncRNA 421 3

LncBook: HSALNT0182885,

LNCipedia: lnc-PUS3-1:3,

NONCODE: NONHSAT024980.2,

URS00009B417F_9606 lncRNA 675 2

LncBook: HSALNT0182875,

NONCODE: NONHSAT160868.1,

ENSG00000260209 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260209 Gene

No ASD Table

Relevant External Links for ENSG00000260209 Gene

GeneLoc Exon Structure for
ENSG00000260209

No data available for mRNA/cDNA for ENSG00000260209 Gene

Expression for ENSG00000260209 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260209 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260209 Gene

This gene is overexpressed in Testis (x6.2).
genes like me logo Genes that share expression patterns with ENSG00000260209: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260209 Gene

Orthologs for ENSG00000260209 Gene

Evolution for ENSG00000260209 Gene

ENSEMBL:
Gene Tree for ENSG00000260209 (if available)
TreeFam:
Gene Tree for ENSG00000260209 (if available)

No data available for Orthologs for ENSG00000260209 Gene

Paralogs for ENSG00000260209 Gene

No data available for Paralogs for ENSG00000260209 Gene

Variants for ENSG00000260209 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260209 Gene

Disorders for ENSG00000260209 Gene

Additional Disease Information for ENSG00000260209

No disorders were found for ENSG00000260209 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260209 Gene

Publications for ENSG00000260209 Gene

No publications were found for ENSG00000260209 Gene.

No data available for Mastermind for ENSG00000260209 Gene

Products for ENSG00000260209 Gene

Sources for ENSG00000260209 Gene