Aliases for ENSG00000260202 Gene

Subcategory (RNA class) for ENSG00000260202 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260202 Gene

  • Novel Transcript 5
  • NONHSAG031484.2 91
  • HSALNG0129260 164
  • Lnc-CST9L-2 165
  • Lnc-CST11-2 165
  • AL109954.2 5

External Ids for ENSG00000260202 Gene

Previous GeneCards Identifiers for ENSG00000260202 Gene

  • GC20M023497

Summaries for ENSG00000260202 Gene

GeneCards Summary for ENSG00000260202 Gene

ENSG00000260202 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260202 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260202 Gene

Genomics for ENSG00000260202 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260202 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J023507 Enhancer 0.9 Ensembl CraniofacialAtlas 0.4 +10.6 10572 2.2 CTCF ZBTB33 TFE3 ZIC2 RXRB IRF2 GABPA CEBPA ZNF205 TFDP1 CST9LP1 CST9 CSTL1 NAPB ENSG00000270001 lnc-CST8-1 piR-30188-105 ENSG00000260202 CST8 CST9L
GH20J023514 Enhancer 0.5 Ensembl 0.7 +4.0 3953 0.6 ZBTB40 JUNB BATF NANOG POU5F1 piR-30188-105 piR-60246-095 CST8 CST9LP1 CSTL1 ENSG00000260202 piR-33362 CST9L
GH20J023512 Enhancer 0.4 Ensembl 0.4 +6.2 6153 0.6 ZNF341 KLF1 EGR2 piR-30188-105 piR-60246-095 NAPB ENSG00000260202 lnc-CST8-1 CST8 CST9L
GH20J023483 Enhancer 0.4 Ensembl 0.3 +36.6 36553 0.2 SOX13 TEAD1 TEAD3 ZNF384 CST3 CST12P CST8 ENSG00000276638 CST11 ENSG00000260202
GH20J023482 Enhancer 0.4 Ensembl 0.3 +37.0 36953 0.2 SOX13 TEAD1 TEAD3 ZNF384 CST12P CST8 ENSG00000276638 CST11 ENSG00000260202
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260202 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260202 Gene

Genomic Locations for ENSG00000260202 Gene
chr20:23,481,645-23,519,054
(GRCh38/hg38)
Size:
37,410 bases
Orientation:
Minus strand
chr20:23,497,521-23,498,706
(GRCh37/hg19)
Size:
1,186 bases
Orientation:
Minus strand

Genomic View for ENSG00000260202 Gene

Genes around ENSG00000260202 on UCSC Golden Path with GeneCards custom track
ENSG00000260202 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260202 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260202 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260202 Gene

Proteins for ENSG00000260202 Gene

Post-translational modifications for ENSG00000260202 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260202 Gene

Domains & Families for ENSG00000260202 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260202 Gene

Function for ENSG00000260202 Gene

Phenotypes From GWAS Catalog for ENSG00000260202 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260202 Gene

Localization for ENSG00000260202 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260202 Gene

Pathways & Interactions for ENSG00000260202 Gene

PathCards logo

SuperPathways for ENSG00000260202 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260202 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260202 Gene

Drugs & Compounds for ENSG00000260202 Gene

No Compound Related Data Available

Transcripts for ENSG00000260202 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260202 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007607FB_9606 lncRNA 557 4

Ensembl: ENST00000619495 (view in UCSC) ,

LncBook: HSALNT0265743,

LNCipedia: lnc-CST11-2:1,

NONCODE: NONHSAT189488.1,

URS000075F894_9606 lncRNA 2148 3

Ensembl: ENST00000564051 (view in UCSC) ,

LNCipedia: lnc-CST9L-2:1,

NONCODE: NONHSAT189490.1,

URS00008B601D_9606 lncRNA 746 3

LncBook: HSALNT0265752,

LNCipedia: lnc-CST11-2:3,

NONCODE: NONHSAT079070.2,

URS00008BBC44_9606 lncRNA 744 3

LncBook: HSALNT0265753,

LNCipedia: lnc-CST11-2:2,

NONCODE: NONHSAT079071.2,

URS00008BCE59_9606 lncRNA 533 2

LNCipedia: lnc-CST11-2:4,

NONCODE: NONHSAT079067.2,

ENSG00000260202 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260202 Gene

No ASD Table

Relevant External Links for ENSG00000260202 Gene

GeneLoc Exon Structure for
ENSG00000260202

No data available for mRNA/cDNA for ENSG00000260202 Gene

Expression for ENSG00000260202 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260202 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260202 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000260202: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260202 Gene

Orthologs for ENSG00000260202 Gene

Evolution for ENSG00000260202 Gene

ENSEMBL:
Gene Tree for ENSG00000260202 (if available)
TreeFam:
Gene Tree for ENSG00000260202 (if available)

No data available for Orthologs for ENSG00000260202 Gene

Paralogs for ENSG00000260202 Gene

No data available for Paralogs for ENSG00000260202 Gene

Variants for ENSG00000260202 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260202 Gene

Disorders for ENSG00000260202 Gene

No disorders were found for ENSG00000260202 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260202 Gene

Publications for ENSG00000260202 Gene

No publications were found for ENSG00000260202 Gene.

No data available for Mastermind for ENSG00000260202 Gene

Products for ENSG00000260202 Gene

Sources for ENSG00000260202 Gene