Aliases for ENSG00000260188 Gene

Subcategory (RNA class) for ENSG00000260188 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000260188 Gene

  • Novel Transcript, Antisense To SLC22A16 5
  • NONHSAG044587 92
  • Lnc-CDC40-1 168
  • AC002464.1 5

External Ids for ENSG00000260188 Gene

Previous GeneCards Identifiers for ENSG00000260188 Gene

  • GC06P110799

Summaries for ENSG00000260188 Gene

GeneCards Summary for ENSG00000260188 Gene

ENSG00000260188 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260188 Gene

Genomics for ENSG00000260188 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260188 Gene

Promoters and enhancers for ENSG00000260188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J110474 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 6.2 -2.1 -2140 2.9 EZH2 SPI1 GABPA REST POLR2A MYC MAX RFX5 SLC22A16 LOC105377938 ENSG00000260188
GH06J110527 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +51.5 51493 6.4 CTCF TRIM28 REST KLF7 RAD21 EP300 TRIM22 SMC3 KLF9 FOSL2 RPF2 GTF3C6 ENSG00000260188 DDO AMD1 lnc-SLC22A16-1 LOC105377940 piR-40442
GH06J110491 Enhancer 1 FANTOM5 ENCODE 5 +14.2 14206 1.3 ZSCAN5C ZNF639 TRIM28 CUX1 ATF2 ZNF341 OSR2 WT1 ZBTB17 ZNF76 CNN2P9 SLC22A16 ENSG00000260188 piR-40442
GH06J110484 Enhancer 0.9 Ensembl ENCODE 5.6 +7.3 7294 4.8 ZNF217 CTCF ZNF510 CUX1 CTBP1 GABPA CEBPG CEBPB NEUROD1 JUND SLC22A16 ENSG00000260188 piR-40442
GH06J109891 Enhancer 0.9 FANTOM5 ENCODE 5.2 -584.5 -584506 4.3 ZNF217 CTCF CLOCK CTBP1 MBD2 ARNT NEUROD1 SPI1 ELF1 GATA3 PPIL6 ENSG00000260188 FIG4 MICAL1 AK9 SMPD2 piR-45517-007 RF00017-5727 RF00017-5726
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260188 Gene

Genomic Locations for ENSG00000260188 Gene
chr6:110,477,907-110,479,436
(GRCh38/hg38)
Size:
1,530 bases
Orientation:
Plus strand
chr6:110,799,110-110,800,639
(GRCh37/hg19)
Size:
1,530 bases
Orientation:
Plus strand

Genomic View for ENSG00000260188 Gene

Genes around ENSG00000260188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260188 Gene

Proteins for ENSG00000260188 Gene

Post-translational modifications for ENSG00000260188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260188 Gene

Domains & Families for ENSG00000260188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260188 Gene

Function for ENSG00000260188 Gene

Phenotypes From GWAS Catalog for ENSG00000260188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260188 Gene

Localization for ENSG00000260188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260188 Gene

Pathways & Interactions for ENSG00000260188 Gene

PathCards logo

SuperPathways for ENSG00000260188 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260188 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260188 Gene

Drugs & Compounds for ENSG00000260188 Gene

No Compound Related Data Available

Transcripts for ENSG00000260188 Gene

mRNA/cDNA for ENSG00000260188 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260188 Gene

No ASD Table

Relevant External Links for ENSG00000260188 Gene

GeneLoc Exon Structure for
ENSG00000260188

Expression for ENSG00000260188 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260188 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260188 Gene

This gene is overexpressed in Whole Blood (x32.3) and Spleen (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000260188: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260188 Gene

Orthologs for ENSG00000260188 Gene

Evolution for ENSG00000260188 Gene

ENSEMBL:
Gene Tree for ENSG00000260188 (if available)
TreeFam:
Gene Tree for ENSG00000260188 (if available)

No data available for Orthologs for ENSG00000260188 Gene

Paralogs for ENSG00000260188 Gene

No data available for Paralogs for ENSG00000260188 Gene

Variants for ENSG00000260188 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260188 Gene

Disorders for ENSG00000260188 Gene

No disorders were found for ENSG00000260188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260188 Gene

Publications for ENSG00000260188 Gene

No publications were found for ENSG00000260188 Gene.

No data available for Mastermind for ENSG00000260188 Gene

Products for ENSG00000260188 Gene

Sources for ENSG00000260188 Gene