ENSG00000260173 Gene (RNA Gene)

 

GC15M072140
GIFtS:
8

Aliases for ENSG00000260173 Gene

Subcategory (RNA class) for ENSG00000260173 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260173 Gene

  • Novel Transcript, Antisense To SENP8 5
  • Lnc-GRAMD2A-1 168
  • NONHSAG017338 92
  • HSALNG0107040 167
  • AC020779.2 5

External Ids for ENSG00000260173 Gene

Previous GeneCards Identifiers for ENSG00000260173 Gene

  • GC15M072432

Summaries for ENSG00000260173 Gene

GeneCards Summary for ENSG00000260173 Gene

ENSG00000260173 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260173 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260173 Gene

Genomics for ENSG00000260173 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260173 Gene

Promoters and enhancers for ENSG00000260173 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH15J072154 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.4 -366 1.9 ZNF217 CTCF TCF12 ZNF639 ZIC2 ZBTB10 REST RAD21 TRIM22 ZEB1 ENSG00000260173 SENP8 MYO9A ENSG00000261187 BBS4 TMEM202 CELF6 lnc-PKM-66
GH15J072153 Enhancer 0.3 Ensembl 500.7 +1.8 1758 0.2 SMARCA4 ENSG00000260173 MYO9A SENP8 NR2E3 RNU2-65P ENSG00000243568 lnc-TMEM202-4
GH15J072155 Enhancer 0.2 Ensembl 500.7 +1.2 1158 0.2 ENSG00000260173 MYO9A SENP8 ENSG00000243568 lnc-TMEM202-4
GH15J072141 Enhancer 0.9 Ensembl 0.4 +14.1 14058 1.2 ZBTB40 SP1 EP300 ZNF510 RELA HES1 MEF2C RCOR1 RAD21 REST MYO9A ENSG00000243568 lnc-TMEM202-4 ENSG00000260173 SENP8
GH15J072135 Enhancer 0.8 Ensembl 0.4 +19.3 19258 0.8 EP300 ZSCAN5C ZNF300 ZNF639 ZNF10 ZNF623 ZNF510 ZNF662 OSR2 ZNF491 ENSG00000243568 RPL21P115 lnc-TMEM202-4 ENSG00000261187 ENSG00000212664 MYO9A CELF6 SENP8 PARP6 RNU2-65P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260173 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260173 Gene

Genomic Locations for ENSG00000260173 Gene
chr15:72,140,504-72,155,459
(GRCh38/hg38)
Size:
14,956 bases
Orientation:
Minus strand
chr15:72,432,845-72,447,800
(GRCh37/hg19)
Size:
14,956 bases
Orientation:
Minus strand

Genomic View for ENSG00000260173 Gene

Genes around ENSG00000260173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260173 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000260173 Gene

Proteins for ENSG00000260173 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000260173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260173 Gene

Domains & Families for ENSG00000260173 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260173 Gene

Function for ENSG00000260173 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260173 Gene

Localization for ENSG00000260173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260173 Gene

Pathways & Interactions for ENSG00000260173 Gene

PathCards logo

SuperPathways for ENSG00000260173 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260173 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260173 Gene

Drugs & Compounds for ENSG00000260173 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000260173 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000260173 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260173 Gene

No ASD Table

Relevant External Links for ENSG00000260173 Gene

GeneLoc Exon Structure for
ENSG00000260173

Expression for ENSG00000260173 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260173 Gene

mRNA expression in normal human tissues for ENSG00000260173 Gene
mRNA expression by GTEx for ENSG00000260173 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260173 Gene

This gene is overexpressed in Testis (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000260173: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260173 Gene

Orthologs for ENSG00000260173 Gene

Evolution for ENSG00000260173 Gene

ENSEMBL:
Gene Tree for ENSG00000260173 (if available)
TreeFam:
Gene Tree for ENSG00000260173 (if available)

No data available for Orthologs for ENSG00000260173 Gene

Paralogs for ENSG00000260173 Gene

No data available for Paralogs for ENSG00000260173 Gene

Variants for ENSG00000260173 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260173 Gene

Disorders for ENSG00000260173 Gene

No disorders were found for ENSG00000260173 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260173 Gene

Publications for ENSG00000260173 Gene

No publications were found for ENSG00000260173 Gene.

No data available for Mastermind for ENSG00000260173 Gene

Products for ENSG00000260173 Gene

Sources for ENSG00000260173 Gene