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Aliases for ENSG00000260084 Gene
Subcategory (RNA class) for ENSG00000260084 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for ENSG00000260084 Gene
External Ids for ENSG00000260084 Gene
- Ensembl: ENSG00000260084
Previous GeneCards Identifiers for ENSG00000260084 Gene
- GC16M068607
Summaries for ENSG00000260084 Gene
GeneCards Summary for ENSG00000260084 Gene
ENSG00000260084 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000260084 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260084 Gene
Genomics for ENSG00000260084 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000260084 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J068590 | Enhancer | 0.8 | ENCODE | 600.7 | -1.2 | -1171 | 0.2 | GATAD2A CTCF ZIC2 RXRB REST RAD21 KMT2B SMARCA5 ZKSCAN8 U2AF2 | ENSG00000260084 ENSG00000275383 piR-45874-088 piR-46002-236 piR-52680-128 EDC4 CENPT CHTF8 ENSG00000263276 NFAT5 | |
| GH16J068589 | Promoter | 0.6 | Ensembl | 600.7 | -0.1 | -89 | 1.2 | ETS1 YY1 CTCF | ENSG00000260084 ENSG00000275383 piR-45874-088 piR-46002-236 piR-52680-128 piR-55361-234 ZFP90 CDH3 | |
| GH16J068588 | Enhancer | 0.2 | Ensembl | 600.7 | +0.8 | 811 | 0.2 | ENSG00000260084 piR-45874-088 piR-46002-236 piR-49322-255 piR-52680-128 piR-55361-234 CDH3 ZFP90 | ||
| GH16J068468 | Promoter/Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 3.9 | +119.2 | 119241 | 3.2 | SP1 POLR2A BACH1 FOXA1 LARP7 ZNF143 TCF12 IKZF2 RCOR1 TRIM22 | EDC4 ZFP90 CTCF CENPT ENSG00000260084 DPEP2 ENSG00000199263 RF00017-2112 ENSG00000274698 SMPD3 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000260084 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000260084 Gene
Genomic Locations for ENSG00000260084 Gene
- chr16:68,573,782-68,589,512
- (GRCh38/hg38)
- Size:
- 15,731 bases
- Orientation:
- Minus strand
- chr16:68,607,685-68,623,415
- (GRCh37/hg19)
- Size:
- 15,731 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000260084 Gene
Genes around ENSG00000260084 on UCSC Golden Path with GeneCards custom track
ENSG00000260084 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q22.1 by Ensembl
ENSG00000260084 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000260084 Gene
Proteins for ENSG00000260084 Gene
Post-translational modifications for ENSG00000260084 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000260084
- Origene Custom Protein Services for ENSG00000260084
No data available for DME Specific Peptides for ENSG00000260084 Gene
Domains & Families for ENSG00000260084 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260084 Gene
Function for ENSG00000260084 Gene
Phenotypes From GWAS Catalog for ENSG00000260084 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for ENSG00000260084
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260084 Gene
Localization for ENSG00000260084 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260084 Gene
Transcripts for ENSG00000260084 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260084 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005FBAA9_9606 | lncRNA | 547 | 3 |
Ensembl: ENST00000569654 (view in UCSC) , LNCipedia: lnc-SMPD3-1:1, NONCODE: NONHSAT143290.2, |
| URS0000E38A82_9606 | lncRNA | 513 | 1 |
ENA: MG828668.1:1..528:ncRNA, |
ENSG00000260084 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Browse CRISPR knockouts for ENSG00000260084
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for ENSG00000260084 Gene
- GeneLoc Exon Structure for
- ENSG00000260084
No data available for mRNA/cDNA for ENSG00000260084 Gene
Expression for ENSG00000260084 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000260084 Gene
This gene is overexpressed in Brain - Cerebellum (x4.8) and Brain - Cerebellar Hemisphere (x4.1).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260084 Gene
Orthologs for ENSG00000260084 Gene
No data available for Orthologs for ENSG00000260084 Gene
Paralogs for ENSG00000260084 Gene
No data available for Paralogs for ENSG00000260084 Gene
Variants for ENSG00000260084 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260084 Gene
Disorders for ENSG00000260084 Gene
Additional Disease Information for ENSG00000260084
No disorders were found for ENSG00000260084 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260084 Gene
Publications for ENSG00000260084 Gene
No publications were found for ENSG00000260084 Gene.
No data available for Mastermind for ENSG00000260084 Gene
Products for ENSG00000260084 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000260084
- Origene Custom Protein Services for ENSG00000260084
- Browse OriGene Inhibitory RNA Products For ENSG00000260084
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000260084
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000260084
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000260084
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000260084
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000260084
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000260084
Sources for ENSG00000260084 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB