ENSG00000260042 Gene (RNA Gene)

 

GC16M050857
GIFtS:
4

Aliases for ENSG00000260042 Gene

Subcategory (RNA class) for ENSG00000260042 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000260042 Gene

  • Novel Transcript 5
  • NONHSAG019434 92
  • Lnc-SNX20-6 168
  • AC025810.1 5

External Ids for ENSG00000260042 Gene

Previous GeneCards Identifiers for ENSG00000260042 Gene

  • GC16M050890

Summaries for ENSG00000260042 Gene

GeneCards Summary for ENSG00000260042 Gene

ENSG00000260042 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260042 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260042 Gene

Genomics for ENSG00000260042 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260042 Gene

Promoters and enhancers for ENSG00000260042 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J050879 Promoter/Enhancer 1 Ensembl ENCODE 500.7 -0.8 -823 1 ZNF623 FOXA2 POLR2A PHF8 ZBTB33 JUND RAD21 RXRA MAX SMARCA4 LINC02187 ENSG00000260042 LINC02128 lnc-SNX20-9
GH16J050878 Enhancer 0.4 Ensembl 500.7 +0.7 677 0.4 RAD51 MITF TOE1 USF2 SREBF1 ENSG00000260042 LINC02187 RNA5SP426 RF00001-131 LINC02128 lnc-SNX20-9
GH16J050880 Enhancer 0.3 ENCODE 500.7 -0.1 -107 0.2 NFYB ENSG00000260042 LINC02187 LINC02128 lnc-SNX20-9
GH16J050861 Enhancer 0.8 Ensembl ENCODE 0.4 +16.8 16777 2.6 JUND FOS PCBP1 CTCF SAP130 FOSL2 RAD21 KDM1A JUNB NFIL3 RNA5SP426 RF00001-131 ENSG00000260042 LINC02128 lnc-SNX20-9
GH16J050859 Enhancer 0.7 ENCODE 0.4 +19.5 19474 0.8 USF1 KDM6A TOE1 NFYB RAD51 ZNF205 GABPB1 RAD21 EHMT2 MITF RNA5SP426 RF00001-131 ENSG00000260042 LINC02128 lnc-SNX20-9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260042 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260042 Gene

Genomic Locations for ENSG00000260042 Gene
chr16:50,856,614-50,879,278
(GRCh38/hg38)
Size:
22,665 bases
Orientation:
Minus strand
chr16:50,890,525-50,913,189
(GRCh37/hg19)
Size:
22,665 bases
Orientation:
Minus strand

Genomic View for ENSG00000260042 Gene

Genes around ENSG00000260042 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260042 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000260042 Gene

Proteins for ENSG00000260042 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000260042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260042 Gene

Domains & Families for ENSG00000260042 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260042 Gene

Function for ENSG00000260042 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000260042 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260042 Gene

Localization for ENSG00000260042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260042 Gene

Pathways & Interactions for ENSG00000260042 Gene

PathCards logo

SuperPathways for ENSG00000260042 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260042 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260042 Gene

Drugs & Compounds for ENSG00000260042 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000260042 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000260042 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260042 Gene

No ASD Table

Relevant External Links for ENSG00000260042 Gene

GeneLoc Exon Structure for
ENSG00000260042

Expression for ENSG00000260042 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260042 Gene

Orthologs for ENSG00000260042 Gene

Evolution for ENSG00000260042 Gene

ENSEMBL:
Gene Tree for ENSG00000260042 (if available)
TreeFam:
Gene Tree for ENSG00000260042 (if available)

No data available for Orthologs for ENSG00000260042 Gene

Paralogs for ENSG00000260042 Gene

No data available for Paralogs for ENSG00000260042 Gene

Variants for ENSG00000260042 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260042 Gene

Disorders for ENSG00000260042 Gene

No disorders were found for ENSG00000260042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260042 Gene

Publications for ENSG00000260042 Gene

No publications were found for ENSG00000260042 Gene.

No data available for Mastermind for ENSG00000260042 Gene

Products for ENSG00000260042 Gene

Sources for ENSG00000260042 Gene