Aliases for ENSG00000260030 Gene

Subcategory (RNA class) for ENSG00000260030 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260030 Gene

  • Novel Transcript 5
  • NONHSAG011258.2 91
  • HSALNG0091305 164
  • Lnc-HOXC13-1 165
  • AC076968.1 5

External Ids for ENSG00000260030 Gene

Previous GeneCards Identifiers for ENSG00000260030 Gene

  • GC12P054148

Summaries for ENSG00000260030 Gene

GeneCards Summary for ENSG00000260030 Gene

ENSG00000260030 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260030 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260030 Gene

Genomics for ENSG00000260030 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260030 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053753 Enhancer 1.1 FANTOM5 ENCODE CraniofacialAtlas 600.7 0.0 -4 1.3 ZNF692 PRDM1 ZIC2 ZSCAN4 ZBTB44 ZNF524 BCL11A ZBTB17 MAX NBN ENSG00000260030 ATP5MC2 HOXC4 ESPL1 CISTR ENSG00000286069 CALCOCO1 HOXC13
GH12J053757 Enhancer 0.6 ENCODE 600.7 +0.9 934 0.2 ZNF692 ZSCAN4 ZBTB44 BCL11A ZBTB17 MAX ZNF184 ZNF335 ZNF366 ZNF2 CISTR ENSG00000260030 ENSG00000286069 CALCOCO1 HOXC13
GH12J053754 Enhancer 0.2 ENCODE 600.7 -1.0 -1028 0 ENSG00000260030 CISTR ENSG00000286069 CALCOCO1 HOXC13
GH12J053755 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.7 +2.3 2259 2.4 CTCF PRDM10 ZNF629 RFX1 ZNF143 ZIC2 ZSCAN4 PKNOX1 RAD21 TRIM22 CISTR LOC105378250 PCBP2 SP1 ENSG00000258344 ATP5MC2 CALCOCO1 AAAS HNRNPA1 ATF7
GH12J053750 Promoter/Enhancer 1.2 Ensembl ENCODE 0.7 -2.7 -2672 1.8 SP1 BACH1 LARP7 PRDM1 ZIC2 POLR2A TCF12 IKZF2 TRIM22 EZH2 ENSG00000260030 CISTR ENSG00000286069 CALCOCO1 HOXC13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260030 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260030 Gene

Genomic Locations for ENSG00000260030 Gene
chr12:53,754,358-53,762,104
(GRCh38/hg38)
Size:
7,747 bases
Orientation:
Plus strand
chr12:54,148,142-54,155,888
(GRCh37/hg19)
Size:
7,747 bases
Orientation:
Plus strand

Genomic View for ENSG00000260030 Gene

Genes around ENSG00000260030 on UCSC Golden Path with GeneCards custom track
ENSG00000260030 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260030 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260030 Gene

Proteins for ENSG00000260030 Gene

Post-translational modifications for ENSG00000260030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260030 Gene

Domains & Families for ENSG00000260030 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260030 Gene

Function for ENSG00000260030 Gene

Phenotypes From GWAS Catalog for ENSG00000260030 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260030 Gene

Localization for ENSG00000260030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260030 Gene

Pathways & Interactions for ENSG00000260030 Gene

PathCards logo

SuperPathways for ENSG00000260030 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260030 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260030 Gene

Drugs & Compounds for ENSG00000260030 Gene

No Compound Related Data Available

Transcripts for ENSG00000260030 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260030 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004E9DD8_9606 lncRNA 429 4

Ensembl: ENST00000566418 (view in UCSC) ,

LncBook: HSALNT0189404,

LNCipedia: lnc-HOXC13-1:1,

NONCODE: NONHSAT028497.2,

URS00008B8D0F_9606 lncRNA 356 3

LncBook: HSALNT0189412,

LNCipedia: lnc-HOXC13-1:2,

NONCODE: NONHSAT028498.2,

URS00009C1952_9606 lncRNA 356 2

LncBook: HSALNT0189413,

NONCODE: NONHSAT162225.1,

ENSG00000260030 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260030 Gene

No ASD Table

Relevant External Links for ENSG00000260030 Gene

GeneLoc Exon Structure for
ENSG00000260030

No data available for mRNA/cDNA for ENSG00000260030 Gene

Expression for ENSG00000260030 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260030 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260030 Gene

This gene is overexpressed in Testis (x15.9).
genes like me logo Genes that share expression patterns with ENSG00000260030: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260030 Gene

Orthologs for ENSG00000260030 Gene

Evolution for ENSG00000260030 Gene

ENSEMBL:
Gene Tree for ENSG00000260030 (if available)
TreeFam:
Gene Tree for ENSG00000260030 (if available)

No data available for Orthologs for ENSG00000260030 Gene

Paralogs for ENSG00000260030 Gene

No data available for Paralogs for ENSG00000260030 Gene

Variants for ENSG00000260030 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260030 Gene

Disorders for ENSG00000260030 Gene

Additional Disease Information for ENSG00000260030

No disorders were found for ENSG00000260030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260030 Gene

Publications for ENSG00000260030 Gene

No publications were found for ENSG00000260030 Gene.

No data available for Mastermind for ENSG00000260030 Gene

Products for ENSG00000260030 Gene

Sources for ENSG00000260030 Gene