Aliases for ENSG00000259985 Gene

Subcategory (RNA class) for ENSG00000259985 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259985 Gene

  • Novel Transcript, Antisense To B4GALT6 5
  • NONHSAG023637.2 91
  • HSALNG0120742 164
  • AC017100.1 5
  • Lnc-TTR-1 165

External Ids for ENSG00000259985 Gene

Previous GeneCards Identifiers for ENSG00000259985 Gene

  • GC18P029267

Summaries for ENSG00000259985 Gene

GeneCards Summary for ENSG00000259985 Gene

ENSG00000259985 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259985 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259985 Gene

Genomics for ENSG00000259985 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259985 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J032412 Promoter 0.3 Ensembl 4.3 +728.2 728176 1 HNRNPA1P7 lnc-MEP1B-2 piR-47326-006 ENSG00000259985 GAREM1 MEP1B
GH18J031677 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.3 -2259 10.1 CTCF PRDM10 ZNF629 ZNF692 POLR2A STAT3 LARP7 PRDM1 ZNF143 ZIC2 B4GALT6 TTR ENSG00000259985 RF00026-480 RF00017-2650
GH18J031672 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -11.6 -11624 2.2 PRDM1 HDGF ZNF768 TRIM28 ZBTB12 HLF GATA2 IKZF1 B4GALT6 RF00026-480 ENSG00000259985 RF00017-2650 TTR
GH18J031701 Enhancer 0.8 Ensembl 0.4 +17.8 17775 3 ZNF512 LEF1 IKZF1 PKNOX1 MTA1 HDAC1 SOX6 EP300 ZNF766 HMBOX1 B4GALT6 RF00100-054 RN7SKP44 ENSG00000259985 lnc-TTR-2 RF00017-2650 TTR
GH18J031710 Enhancer 0.7 Ensembl 0.3 +26.5 26476 1.6 CTCF ATF7 REST JUND ZSCAN4 CEBPA EP300 CEBPB HMBOX1 E2F5 RF00100-054 lnc-TTR-2 RN7SKP44 B4GALT6 ENSG00000259985 RF00017-2650 TTR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259985 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259985 Gene

Genomic Locations for ENSG00000259985 Gene
chr18:31,684,725-31,689,295
(GRCh38/hg38)
Size:
4,571 bases
Orientation:
Plus strand
chr18:29,265,618-29,266,786
(GRCh37/hg19)
Size:
1,169 bases
Orientation:
Plus strand

Genomic View for ENSG00000259985 Gene

Genes around ENSG00000259985 on UCSC Golden Path with GeneCards custom track
ENSG00000259985 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259985 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259985 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259985 Gene

Proteins for ENSG00000259985 Gene

Post-translational modifications for ENSG00000259985 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259985 Gene

Domains & Families for ENSG00000259985 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259985 Gene

Function for ENSG00000259985 Gene

Phenotypes From GWAS Catalog for ENSG00000259985 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259985 Gene

Localization for ENSG00000259985 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259985 Gene

Pathways & Interactions for ENSG00000259985 Gene

PathCards logo

SuperPathways for ENSG00000259985 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259985 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259985 Gene

Drugs & Compounds for ENSG00000259985 Gene

No Compound Related Data Available

Transcripts for ENSG00000259985 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259985 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005425BD_9606 lncRNA 1169 2

Ensembl: ENST00000565978 (view in UCSC) ,

LNCipedia: lnc-TTR-1:1,

URS00008B73FE_9606 lncRNA 3135 2

LNCipedia: lnc-TTR-1:2,

NONCODE: NONHSAT058829.2,

URS00009B1BCF_9606 lncRNA 400 2

LncBook: HSALNT0249623,

NONCODE: NONHSAT177604.1,

URS0000D5DF0C_9606 lncRNA 4466 1

LNCipedia: lnc-TTR-1:4,

URS0000D58104_9606 lncRNA 2869 1

LNCipedia: lnc-TTR-1:3,

ENSG00000259985 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259985 Gene

No ASD Table

Relevant External Links for ENSG00000259985 Gene

GeneLoc Exon Structure for
ENSG00000259985

No data available for mRNA/cDNA for ENSG00000259985 Gene

Expression for ENSG00000259985 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259985 Gene

genes like me logo Genes that share expression patterns with ENSG00000259985: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259985 Gene

Orthologs for ENSG00000259985 Gene

Evolution for ENSG00000259985 Gene

ENSEMBL:
Gene Tree for ENSG00000259985 (if available)
TreeFam:
Gene Tree for ENSG00000259985 (if available)

No data available for Orthologs for ENSG00000259985 Gene

Paralogs for ENSG00000259985 Gene

No data available for Paralogs for ENSG00000259985 Gene

Variants for ENSG00000259985 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259985 Gene

Disorders for ENSG00000259985 Gene

No disorders were found for ENSG00000259985 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259985 Gene

Publications for ENSG00000259985 Gene

No publications were found for ENSG00000259985 Gene.

No data available for Mastermind for ENSG00000259985 Gene

Products for ENSG00000259985 Gene

Sources for ENSG00000259985 Gene