Aliases for ENSG00000259977 Gene

Subcategory (RNA class) for ENSG00000259977 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259977 Gene

  • Novel Transcript 5
  • NONHSAG054238.2 91
  • HSALNG0137309 164
  • AL121578.2 5
  • Lnc-HYPM-1 165

External Ids for ENSG00000259977 Gene

Previous GeneCards Identifiers for ENSG00000259977 Gene

  • GC0XP037766

Summaries for ENSG00000259977 Gene

GeneCards Summary for ENSG00000259977 Gene

ENSG00000259977 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259977 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259977 Gene

Genomics for ENSG00000259977 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259977 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ037904 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.3 -326 2 PRDM10 ZNF629 CTCF ZIC2 PATZ1 ZNF341 SP2 SP1 RFX1 ZXDB ENSG00000259977 SYTL5 RNU6-49P lnc-CYBB-1 H2AP ENSG00000250349
GH0XJ037912 Enhancer 1 Ensembl ENCODE 0.4 +6.5 6511 1.5 CREB1 PRDM10 ZNF629 ZNF692 JUND PATZ1 ZNF600 ZBTB20 ZNF639 ZNF10 ENSG00000259977 SYTL5 SC4MOP H2AP ENSG00000250349
GH0XJ037921 Enhancer 0.9 Ensembl ENCODE 0.4 +16.2 16153 1.8 ZNF629 ZNF148 RBAK ZNF639 JUND ZXDB OSR2 BCL11A FOS KLF13 ENSG00000259977 SC4MOP SYTL5 H2AP ENSG00000250349
GH0XJ037942 Enhancer 0.4 Ensembl 0.3 +37.1 37054 0.8 SPI1 TRIM28 MZF1 RNU6-49P SC4MOP ENSG00000259977 H2AP SYTL5 ENSG00000250349
GH0XJ037896 Enhancer 0.2 Ensembl 0.4 -9.4 -9446 0.2 RNU6-49P ENSG00000259977 SYTL5 lnc-CYBB-1 H2AP ENSG00000250349
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259977 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259977 Gene

Genomic Locations for ENSG00000259977 Gene
chrX:37,906,147-37,949,406
(GRCh38/hg38)
Size:
43,260 bases
Orientation:
Plus strand
chrX:37,765,400-37,808,658
(GRCh37/hg19)
Size:
43,259 bases
Orientation:
Plus strand

Genomic View for ENSG00000259977 Gene

Genes around ENSG00000259977 on UCSC Golden Path with GeneCards custom track
ENSG00000259977 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259977 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259977 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259977 Gene

Proteins for ENSG00000259977 Gene

Post-translational modifications for ENSG00000259977 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259977 Gene

Domains & Families for ENSG00000259977 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259977 Gene

Function for ENSG00000259977 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259977 Gene

Localization for ENSG00000259977 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259977 Gene

Pathways & Interactions for ENSG00000259977 Gene

PathCards logo

SuperPathways for ENSG00000259977 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259977 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259977 Gene

Drugs & Compounds for ENSG00000259977 Gene

No Compound Related Data Available

Transcripts for ENSG00000259977 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259977 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001512AE_9606 lncRNA 710 4

Ensembl: ENST00000567273 (view in UCSC) ,

LncBook: HSALNT0281470,

LNCipedia: lnc-HYPM-1:1,

NONCODE: NONHSAT136635.2,

URS00009B678B_9606 lncRNA 710 2

LncBook: HSALNT0281471,

NONCODE: NONHSAT222614.1,

ENSG00000259977 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259977 Gene

No ASD Table

Relevant External Links for ENSG00000259977 Gene

GeneLoc Exon Structure for
ENSG00000259977

No data available for mRNA/cDNA for ENSG00000259977 Gene

Expression for ENSG00000259977 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259977 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259977 Gene

This gene is overexpressed in Brain - Hippocampus (x9.2), Brain - Amygdala (x6.1), Brain - Hypothalamus (x6.1), Brain - Nucleus accumbens (basal ganglia) (x5.4), and Adrenal Gland (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000259977: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259977 Gene

Orthologs for ENSG00000259977 Gene

Evolution for ENSG00000259977 Gene

ENSEMBL:
Gene Tree for ENSG00000259977 (if available)
TreeFam:
Gene Tree for ENSG00000259977 (if available)

No data available for Orthologs for ENSG00000259977 Gene

Paralogs for ENSG00000259977 Gene

No data available for Paralogs for ENSG00000259977 Gene

Variants for ENSG00000259977 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259977 Gene

Disorders for ENSG00000259977 Gene

Additional Disease Information for ENSG00000259977

No disorders were found for ENSG00000259977 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259977 Gene

Publications for ENSG00000259977 Gene

No publications were found for ENSG00000259977 Gene.

No data available for Mastermind for ENSG00000259977 Gene

Products for ENSG00000259977 Gene

Sources for ENSG00000259977 Gene