Aliases for ENSG00000259972 Gene

Subcategory (RNA class) for ENSG00000259972 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259972 Gene

  • Novel Transcript, Antisense To PSMD7 5
  • NONHSAG019967.2 91
  • Lnc-CLEC18B-7 165
  • HSALNG0112672 164
  • AC009120.2 5

External Ids for ENSG00000259972 Gene

Previous GeneCards Identifiers for ENSG00000259972 Gene

  • GC16M074340

Summaries for ENSG00000259972 Gene

GeneCards Summary for ENSG00000259972 Gene

ENSG00000259972 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259972 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259972 Gene

Genomics for ENSG00000259972 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J074605 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 36.2 -271.6 -271612 5.1 CEBPG SP1 CREB1 GATAD2A PRDM10 TFE3 SIX5 IKZF1 NFKBIZ KDM1A GLG1 RFWD3 ENSG00000259972 ENSG00000239763 ENSG00000260884 ENSG00000214331 WDR59 CLEC18B RF00017-2152 RF00017-2150
GH16J075241 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 30.7 -915.1 -915110 17.5 CEBPG HNRNPL CREB1 GATAD2A ZBTB33 TEAD4 PRDM10 TFE3 NFKBIZ ZNF692 BCAR1 ENSG00000280152 lnc-CTRB2-1 ENSG00000214331 RFWD3 ENSG00000259972 WDR59 ENSG00000261783 ADAT1 ENSG00000260884
GH16J075052 Enhancer 1.3 Ensembl ENCODE dbSUPER 63.7 -718.9 -718864 4 ZNF221 HNRNPL GATAD2A SOX13 IKZF1 ZNF692 RCOR2 ZHX2 ZNF300 FOXA1 ENSG00000259972 ENSG00000239763 ENSG00000260884 ZNRF1 CFDP1 ENSG00000214331 WDR59 RF00017-2155 HSALNG0112716 LDHD
GH16J075147 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 22.8 -813.7 -813676 2.4 ZNF221 HNRNPL PRDM10 ZNF629 SIX5 NFKBIZ POLR2A ZNF692 BACH1 TARDBP ZFP1 lnc-LDHD-3 lnc-ZNRF1-1 ENSG00000239763 ENSG00000260884 ENSG00000259972 WDR59 ENSG00000214331 NPIPB15 RF00017-2157
GH16J074295 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 16.5 +38.5 38456 3.4 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF512 RFX1 SOX13 IKZF1 ENSG00000261404 PSMD7 ENSG00000214331 ENSG00000239763 ENSG00000259972 ENSG00000260884 RFWD3 WDR59 ENSG00000207525 NPIPB15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259972 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259972 Gene

Genomic Locations for ENSG00000259972 Gene
chr16:74,305,109-74,335,346
(GRCh38/hg38)
Size:
30,238 bases
Orientation:
Minus strand
chr16:74,339,100-74,369,244
(GRCh37/hg19)
Size:
30,145 bases
Orientation:
Minus strand

Genomic View for ENSG00000259972 Gene

Genes around ENSG00000259972 on UCSC Golden Path with GeneCards custom track
ENSG00000259972 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259972 Gene

Proteins for ENSG00000259972 Gene

Post-translational modifications for ENSG00000259972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259972 Gene

Domains & Families for ENSG00000259972 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259972 Gene

Function for ENSG00000259972 Gene

Phenotypes From GWAS Catalog for ENSG00000259972 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259972 Gene

Localization for ENSG00000259972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259972 Gene

Pathways & Interactions for ENSG00000259972 Gene

PathCards logo

SuperPathways for ENSG00000259972 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259972 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259972 Gene

Drugs & Compounds for ENSG00000259972 Gene

No Compound Related Data Available

Transcripts for ENSG00000259972 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259972 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003237D0_9606 lncRNA 539 4

Ensembl: ENST00000565313 (view in UCSC) ,

LncBook: HSALNT0233524,

LNCipedia: lnc-CLEC18B-7:3,

NONCODE: NONHSAT143670.2,

URS00009B9FA7_9606 lncRNA 522 4

Ensembl: ENST00000620711 (view in UCSC) ,

LncBook: HSALNT0233522,

LNCipedia: lnc-CLEC18B-7:8,

NONCODE: NONHSAT174048.1,

URS000053A5C9_9606 lncRNA 490 4

Ensembl: ENST00000561921 (view in UCSC) ,

LncBook: HSALNT0233528,

LNCipedia: lnc-CLEC18B-7:1,

NONCODE: NONHSAT143672.2,

URS00009B8CF6_9606 lncRNA 2032 3

Ensembl: ENST00000621548 (view in UCSC) ,

LNCipedia: lnc-CLEC18B-7:7,

NONCODE: NONHSAT174049.1,

URS00002D1726_9606 lncRNA 679 3

Ensembl: ENST00000566411 (view in UCSC) ,

LNCipedia: lnc-CLEC18B-7:4,

NONCODE: NONHSAT143669.2,

ENSG00000259972 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259972 Gene

No ASD Table

Relevant External Links for ENSG00000259972 Gene

GeneLoc Exon Structure for
ENSG00000259972

No data available for mRNA/cDNA for ENSG00000259972 Gene

Expression for ENSG00000259972 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259972 Gene

genes like me logo Genes that share expression patterns with ENSG00000259972: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259972 Gene

Orthologs for ENSG00000259972 Gene

Evolution for ENSG00000259972 Gene

ENSEMBL:
Gene Tree for ENSG00000259972 (if available)
TreeFam:
Gene Tree for ENSG00000259972 (if available)

No data available for Orthologs for ENSG00000259972 Gene

Paralogs for ENSG00000259972 Gene

No data available for Paralogs for ENSG00000259972 Gene

Variants for ENSG00000259972 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259972 Gene

Disorders for ENSG00000259972 Gene

Additional Disease Information for ENSG00000259972

No disorders were found for ENSG00000259972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259972 Gene

Publications for ENSG00000259972 Gene

No publications were found for ENSG00000259972 Gene.

No data available for Mastermind for ENSG00000259972 Gene

Products for ENSG00000259972 Gene

Sources for ENSG00000259972 Gene