Aliases for ENSG00000259972 Gene

Subcategory (RNA class) for ENSG00000259972 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259972 Gene

  • Novel Transcript, Antisense To PSMD7 5
  • Lnc-CLEC18B-7 168
  • NONHSAG019967 92
  • HSALNG0112672 167
  • AC009120.2 5

External Ids for ENSG00000259972 Gene

Previous GeneCards Identifiers for ENSG00000259972 Gene

  • GC16M074340

Summaries for ENSG00000259972 Gene

GeneCards Summary for ENSG00000259972 Gene

ENSG00000259972 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259972 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259972 Gene

Genomics for ENSG00000259972 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259972 Gene

Promoters and enhancers for ENSG00000259972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J074605 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 36.2 -271.6 -271612 5.1 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G SP1 NCOR1 GTF2E2 GLG1 RFWD3 ENSG00000259972 ENSG00000239763 ENSG00000260884 BCAR1 TMEM231 WDR59 CLEC18B RF00017-2152
GH16J075052 Enhancer 1.3 Ensembl ENCODE dbSUPER 63.7 -718.9 -718864 4 ZNF217 ZNF300 NCOR1 KDM6A CLOCK FOXA1 ZNF510 TEAD1 ZKSCAN8 CTBP1 ENSG00000259972 ENSG00000239763 ENSG00000260884 ZNRF1 CFDP1 ENSG00000214331 WDR59 RF00017-2155 HSALNG0112716
GH16J075241 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20.7 -915.1 -915110 17.5 HNRNPK ZNF217 CTCF NRF1 TCF12 POLR2G PHF8 JUND TEAD4 FOS BCAR1 ENSG00000280152 lnc-CTRB2-1 ENSG00000214331 RFWD3 ENSG00000261783 ENSG00000259972 ENSG00000260884 WDR59 ENSG00000261079
GH16J074983 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.5 -651.6 -651554 6.2 EP300 FOXK2 ZBTB40 ZNF217 NRF1 TCF12 POLR2G SP1 NCOR1 GTF2E2 WDR59 ENSG00000214331 ENSG00000261783 ENSG00000239763 RFWD3 ENSG00000259972 ENSG00000260884 ENSG00000207525 CHST5 RF00017-2154
GH16J074740 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 15.2 -407.8 -407848 5.1 ZNF217 TCF12 FOS ZNF639 ZNF10 ZIC2 POLR2A ZNF423 TRIM28 KLF4 FA2H ENSG00000261079 ENSG00000259972 NPIPB15 ADAT1 MLKL WDR59 ENSG00000260884 RNU6-237P RFWD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259972 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259972 Gene

Genomic Locations for ENSG00000259972 Gene
chr16:74,305,127-74,335,346
(GRCh38/hg38)
Size:
30,220 bases
Orientation:
Minus strand
chr16:74,339,100-74,369,244
(GRCh37/hg19)
Size:
30,145 bases
Orientation:
Minus strand

Genomic View for ENSG00000259972 Gene

Genes around ENSG00000259972 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259972 Gene

Proteins for ENSG00000259972 Gene

Post-translational modifications for ENSG00000259972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259972 Gene

Domains & Families for ENSG00000259972 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259972 Gene

Function for ENSG00000259972 Gene

Phenotypes From GWAS Catalog for ENSG00000259972 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259972 Gene

Localization for ENSG00000259972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259972 Gene

Pathways & Interactions for ENSG00000259972 Gene

PathCards logo

SuperPathways for ENSG00000259972 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259972 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259972 Gene

Drugs & Compounds for ENSG00000259972 Gene

No Compound Related Data Available

Transcripts for ENSG00000259972 Gene

mRNA/cDNA for ENSG00000259972 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259972 Gene

No ASD Table

Relevant External Links for ENSG00000259972 Gene

GeneLoc Exon Structure for
ENSG00000259972

Expression for ENSG00000259972 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259972 Gene

genes like me logo Genes that share expression patterns with ENSG00000259972: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259972 Gene

Orthologs for ENSG00000259972 Gene

Evolution for ENSG00000259972 Gene

ENSEMBL:
Gene Tree for ENSG00000259972 (if available)
TreeFam:
Gene Tree for ENSG00000259972 (if available)

No data available for Orthologs for ENSG00000259972 Gene

Paralogs for ENSG00000259972 Gene

No data available for Paralogs for ENSG00000259972 Gene

Variants for ENSG00000259972 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259972 Gene

Disorders for ENSG00000259972 Gene

No disorders were found for ENSG00000259972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259972 Gene

Publications for ENSG00000259972 Gene

No publications were found for ENSG00000259972 Gene.

No data available for Mastermind for ENSG00000259972 Gene

Products for ENSG00000259972 Gene

Sources for ENSG00000259972 Gene