Aliases for ENSG00000259946 Gene

Subcategory (RNA class) for ENSG00000259946 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000259946 Gene

  • Novel Transcript 5
  • NONHSAG002177 92
  • Lnc-PLPPR5-3 168
  • BX005019.1 5

External Ids for ENSG00000259946 Gene

Previous GeneCards Identifiers for ENSG00000259946 Gene

  • GC01M098432

Summaries for ENSG00000259946 Gene

GeneCards Summary for ENSG00000259946 Gene

ENSG00000259946 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259946 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259946 Gene

Genomics for ENSG00000259946 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259946 Gene

Promoters and enhancers for ENSG00000259946 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J098044 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE 4.8 -77.5 -77487 7.4 ZBTB40 SIN3A PHF8 REST SAP30 ZBTB25 RCOR1 TGIF2 ZBTB26 HDAC2 MIR2682 MK631887 MIR137 ENSG00000259946 MIR137HG MK631885 lnc-SNX7-10
GH01J097986 Enhancer 0.3 Ensembl 6.1 -17.7 -17687 1.4 MAFK FOS MK631885 ENSG00000259946 lnc-SNX7-10 DPYD MIR137HG
GH01J097943 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +25.4 25414 3.2 MXI1 JUND RCOR1 GATA2 TBX21 ATF2 CHD2 YY1 MTA2 POLR2A DPYD lnc-PLPPR5-1 ENSG00000259946 MIR137HG
GH01J097937 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +30.4 30414 2.8 JUND FOS EP300 CTBP1 DEK FOSL2 CEBPB JUN STAT3 PKNOX1 DPYD lnc-PLPPR5-1 ENSG00000259946 MIR137HG
GH01J097930 Enhancer 0.6 Ensembl 0.3 +38.2 38213 0.4 NCOR1 FOXA2 RAD21 RXRA SMARCA4 REST HNF4A FOXA1 MIXL1 YY1 lnc-PLPPR5-1 ENSG00000259946 DPYD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259946 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259946 Gene

Genomic Locations for ENSG00000259946 Gene
chr1:97,967,005-97,968,814
(GRCh38/hg38)
Size:
1,810 bases
Orientation:
Minus strand
chr1:98,432,561-98,434,370
(GRCh37/hg19)
Size:
1,810 bases
Orientation:
Minus strand

Genomic View for ENSG00000259946 Gene

Genes around ENSG00000259946 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259946 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259946 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259946 Gene

Proteins for ENSG00000259946 Gene

Post-translational modifications for ENSG00000259946 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259946 Gene

Domains & Families for ENSG00000259946 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259946 Gene

Function for ENSG00000259946 Gene

Phenotypes From GWAS Catalog for ENSG00000259946 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259946 Gene

Localization for ENSG00000259946 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259946 Gene

Pathways & Interactions for ENSG00000259946 Gene

PathCards logo

SuperPathways for ENSG00000259946 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259946 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259946 Gene

Drugs & Compounds for ENSG00000259946 Gene

No Compound Related Data Available

Transcripts for ENSG00000259946 Gene

mRNA/cDNA for ENSG00000259946 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259946 Gene

No ASD Table

Relevant External Links for ENSG00000259946 Gene

GeneLoc Exon Structure for
ENSG00000259946

Expression for ENSG00000259946 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259946 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259946 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x6.0), Brain - Putamen (basal ganglia) (x5.4), Brain - Cortex (x5.3), Brain - Frontal Cortex (BA9) (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.7), Brain - Caudate (basal ganglia) (x4.3), Brain - Hypothalamus (x4.2), Brain - Hippocampus (x4.2), and Pituitary (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000259946: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259946 Gene

Orthologs for ENSG00000259946 Gene

Evolution for ENSG00000259946 Gene

ENSEMBL:
Gene Tree for ENSG00000259946 (if available)
TreeFam:
Gene Tree for ENSG00000259946 (if available)

No data available for Orthologs for ENSG00000259946 Gene

Paralogs for ENSG00000259946 Gene

No data available for Paralogs for ENSG00000259946 Gene

Variants for ENSG00000259946 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259946 Gene

Disorders for ENSG00000259946 Gene

No disorders were found for ENSG00000259946 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259946 Gene

Publications for ENSG00000259946 Gene

No publications were found for ENSG00000259946 Gene.

No data available for Mastermind for ENSG00000259946 Gene

Products for ENSG00000259946 Gene

Sources for ENSG00000259946 Gene