ENSG00000259945 Gene (RNA Gene)

 

GC16M067542
GIFtS:
6
See more...

Aliases for ENSG00000259945 Gene

Subcategory (RNA class) for ENSG00000259945 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259945 Gene

  • Novel Transcript, Antisense To FAM65A 5
  • NONHSAG019751.2 91
  • NONHSAG019748.2 91
  • HSALNG0112216 164
  • HSALNG0112214 164
  • AC027682.2 5
  • Lnc-AGRP-1 165

External Ids for ENSG00000259945 Gene

Previous GeneCards Identifiers for ENSG00000259945 Gene

  • GC16M067576

Summaries for ENSG00000259945 Gene

GeneCards Summary for ENSG00000259945 Gene

ENSG00000259945 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259945 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259945 Gene

Genomics for ENSG00000259945 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000259945 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J067541 Enhancer 0.8 ENCODE dbSUPER 600.7 +0.6 608 1.8 PRDM10 SP2 RUNX3 FOXA2 RBM22 HDGF ZFHX2 SIN3A KLF17 ZNF513 ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1 CTCF
GH16J067542 Enhancer 0.7 Ensembl dbSUPER 600.7 +1.9 1862 0.2 NR2C1 BCL11A NR2F2 NR2F1 NR2F6 BCL11B ESRRA RXRA ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1 CTCF
GH16J067544 Enhancer 0.4 dbSUPER 600.7 -1.9 -1918 0.8 CTCF EGR1 ZNF335 POLR2A ENSG00000259945 CARMIL2 ACD PARD6A ENSG00000237718 C16orf86 ENKD1 ENSG00000280214 CTCF RIPOR1
GH16J067545 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.1 -5126 5.3 HNRNPL CREB1 GATAD2A CTCF PRDM10 TFE3 IKZF1 ZNF692 BACH1 PRDM1 HSD11B2 CARMIL2 ATP6V0D1 RIPOR1 PARD6A ACD ENSG00000237718 C16orf86 ENKD1 DPEP2
GH16J067550 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.4 -9393 2.8 PRDM10 PRDM1 ZIC2 PATZ1 ZNF341 SCRT1 NFIC WT1 EBF1 NFIB ENSG00000280214 RIPOR1 CARMIL2 ENSG00000237718 ACD PARD6A ATP6V0D1 HSD11B2 NFATC3 PRMT7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259945 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259945 Gene

Genomic Locations for ENSG00000259945 Gene
chr16:67,542,123-67,542,963
(GRCh38/hg38)
Size:
841 bases
Orientation:
Minus strand
chr16:67,576,026-67,576,866
(GRCh37/hg19)
Size:
841 bases
Orientation:
Minus strand

Genomic View for ENSG00000259945 Gene

Genes around ENSG00000259945 on UCSC Golden Path with GeneCards custom track
ENSG00000259945 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259945 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259945 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259945 Gene

Proteins for ENSG00000259945 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259945 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259945 Gene

Domains & Families for ENSG00000259945 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259945 Gene

Function for ENSG00000259945 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259945 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259945 Gene

Localization for ENSG00000259945 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259945 Gene

Pathways & Interactions for ENSG00000259945 Gene

PathCards logo

SuperPathways for ENSG00000259945 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259945 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259945 Gene

Drugs & Compounds for ENSG00000259945 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259945 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259945 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049C0D3_9606 lncRNA 336 4

Ensembl: ENST00000563083 (view in UCSC) ,

LncBook: HSALNT0232692,

LNCipedia: lnc-AGRP-1:19,

NONCODE: NONHSAT143139.2,

URS00009B88AC_9606 lncRNA 910 2

LncBook: HSALNT0232679,

NONCODE: NONHSAT173986.1,

URS0000D5D77C_9606 lncRNA 838 2

LncBook: HSALNT0232688,

LNCipedia: lnc-AGRP-1:9,

URS0000D58A3B_9606 lncRNA 24207 1

LNCipedia: lnc-AGRP-1:10,

URS0000D5D136_9606 lncRNA 22074 1

LNCipedia: lnc-AGRP-1:13,

ENSG00000259945 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259945 Gene

No ASD Table

Relevant External Links for ENSG00000259945 Gene

GeneLoc Exon Structure for
ENSG00000259945

No data available for mRNA/cDNA for ENSG00000259945 Gene

Expression for ENSG00000259945 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259945 Gene

mRNA expression in normal human tissues for ENSG00000259945 Gene
mRNA expression by GTEx for ENSG00000259945 Gene
genes like me logo Genes that share expression patterns with ENSG00000259945: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259945 Gene

Orthologs for ENSG00000259945 Gene

Evolution for ENSG00000259945 Gene

ENSEMBL:
Gene Tree for ENSG00000259945 (if available)
TreeFam:
Gene Tree for ENSG00000259945 (if available)

No data available for Orthologs for ENSG00000259945 Gene

Paralogs for ENSG00000259945 Gene

No data available for Paralogs for ENSG00000259945 Gene

Variants for ENSG00000259945 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259945 Gene

Disorders for ENSG00000259945 Gene

No disorders were found for ENSG00000259945 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259945 Gene

Publications for ENSG00000259945 Gene

No publications were found for ENSG00000259945 Gene.

No data available for Mastermind for ENSG00000259945 Gene

Products for ENSG00000259945 Gene

Sources for ENSG00000259945 Gene