ENSG00000259945 Gene (RNA Gene)

 

GC16M067542
GIFtS:
7

Aliases for ENSG00000259945 Gene

Subcategory (RNA class) for ENSG00000259945 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259945 Gene

  • Novel Transcript, Antisense To FAM65A 5
  • NONHSAG019751 92
  • HSALNG0112216 167
  • NONHSAG019748 92
  • HSALNG0112214 167
  • AC027682.2 5
  • Lnc-AGRP-1 168

External Ids for ENSG00000259945 Gene

Previous GeneCards Identifiers for ENSG00000259945 Gene

  • GC16M067576

Summaries for ENSG00000259945 Gene

GeneCards Summary for ENSG00000259945 Gene

ENSG00000259945 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259945 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259945 Gene

Genomics for ENSG00000259945 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259945 Gene

Promoters and enhancers for ENSG00000259945 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J067541 Enhancer 0.8 ENCODE dbSUPER 500.7 +0.6 608 1.8 FOXA2 SP2 FOS POLR2G RBM22 ZFHX2 SIN3A ZNF513 SUPT5H KLF17 ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1
GH16J067542 Enhancer 0.7 Ensembl dbSUPER 500.7 +1.9 1862 0.2 NR2F2 BCL11A NR2F1 BCL11B NR2F6 ESRRA NR2C1 RXRA ZNF770 ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1
GH16J067544 Enhancer 0.5 dbSUPER 500.7 -1.9 -1918 0.8 CTCF POLR2G ZNF335 AGO2 CTCFL POLR2A EGR1 ENSG00000259945 CARMIL2 PARD6A ACD ENSG00000237718 C16orf86 ENKD1 ENSG00000280214 RIPOR1
GH16J067545 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.1 -5126 5.3 ZNF217 CTCF USF1 ZIC2 GABPA AFF1 REST ZBTB25 MYC TGIF2 HSD11B2 CARMIL2 ATP6V0D1 RIPOR1 ACD PARD6A ENSG00000237718 ENKD1 C16orf86 DPEP2
GH16J067550 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.4 -9393 2.8 ZIC2 ZNF341 WT1 NFIC ZNF263 MEF2B EBF1 SCRT1 NFIB GLIS1 ENSG00000280214 RIPOR1 CARMIL2 ENSG00000237718 ACD PARD6A ATP6V0D1 HSD11B2 NFATC3 PRMT7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259945 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259945 Gene

Genomic Locations for ENSG00000259945 Gene
chr16:67,542,123-67,542,963
(GRCh38/hg38)
Size:
841 bases
Orientation:
Minus strand
chr16:67,576,026-67,576,866
(GRCh37/hg19)
Size:
841 bases
Orientation:
Minus strand

Genomic View for ENSG00000259945 Gene

Genes around ENSG00000259945 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259945 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259945 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259945 Gene

Proteins for ENSG00000259945 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259945 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259945 Gene

Domains & Families for ENSG00000259945 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259945 Gene

Function for ENSG00000259945 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259945 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259945 Gene

Localization for ENSG00000259945 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259945 Gene

Pathways & Interactions for ENSG00000259945 Gene

PathCards logo

SuperPathways for ENSG00000259945 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259945 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259945 Gene

Drugs & Compounds for ENSG00000259945 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259945 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259945 Gene

8 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259945 Gene

No ASD Table

Relevant External Links for ENSG00000259945 Gene

GeneLoc Exon Structure for
ENSG00000259945

Expression for ENSG00000259945 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259945 Gene

mRNA expression in normal human tissues for ENSG00000259945 Gene
mRNA expression by GTEx for ENSG00000259945 Gene
genes like me logo Genes that share expression patterns with ENSG00000259945: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259945 Gene

Orthologs for ENSG00000259945 Gene

Evolution for ENSG00000259945 Gene

ENSEMBL:
Gene Tree for ENSG00000259945 (if available)
TreeFam:
Gene Tree for ENSG00000259945 (if available)

No data available for Orthologs for ENSG00000259945 Gene

Paralogs for ENSG00000259945 Gene

No data available for Paralogs for ENSG00000259945 Gene

Variants for ENSG00000259945 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259945 Gene

Disorders for ENSG00000259945 Gene

No disorders were found for ENSG00000259945 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259945 Gene

Publications for ENSG00000259945 Gene

No publications were found for ENSG00000259945 Gene.

No data available for Mastermind for ENSG00000259945 Gene

Products for ENSG00000259945 Gene

Sources for ENSG00000259945 Gene