Aliases for ENSG00000259928 Gene

Subcategory (RNA class) for ENSG00000259928 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000259928 Gene

  • Novel Transcript 5
  • NONHSAG021399 92
  • Lnc-TMIGD1-1 168
  • AC011840.2 5

External Ids for ENSG00000259928 Gene

Previous GeneCards Identifiers for ENSG00000259928 Gene

  • GC17M028891

Summaries for ENSG00000259928 Gene

GeneCards Summary for ENSG00000259928 Gene

ENSG00000259928 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259928 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259928 Gene

Genomics for ENSG00000259928 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259928 Gene

Promoters and enhancers for ENSG00000259928 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J030562 Promoter/Enhancer 0.9 Ensembl ENCODE 508.1 +1.6 1615 2.2 ZIC2 CTBP1 KLF9 SPI1 TCF12 POLR2A ZSCAN29 MYC MAX CBFA2T2 ENSG00000259928 piR-31193-004 TBC1D29P
GH17J030565 Enhancer 0.4 ENCODE 500.7 +0.3 328 0.2 ZNF654 CTCF RAD21 ENSG00000259928 piR-31193-004 TBC1D29P
GH17J030550 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE 9.2 +14.4 14376 2.4 CTBP1 POLR2A SRF MEF2B SPI1 FOSL1 ZFHX2 ELF1 SUZ12 EBF1 TBC1D29P ENSG00000263860 ENSG00000279431 piR-30369-003 lnc-TMIGD1-3 CORO6 ENSG00000259928 RAB11FIP4 CPD
GH17J030558 Enhancer 0.2 Ensembl 10.8 +7.3 7276 0.6 ENSG00000266775 LOC100420311 piR-40383-004 piR-44494-004 piR-35344-002 piR-46772-003 piR-56558-004 piR-54933-003 piR-50747-004 ENSG00000259928
GH17J030568 Enhancer 0.3 Ensembl 0.7 -2.7 -2725 0.6 ZFHX2 CTCF ENSG00000259928 KRT17P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259928 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259928 Gene

Genomic Locations for ENSG00000259928 Gene
chr17:30,564,057-30,565,576
(GRCh38/hg38)
Size:
1,520 bases
Orientation:
Minus strand
chr17:28,891,075-28,892,594
(GRCh37/hg19)
Size:
1,520 bases
Orientation:
Minus strand

Genomic View for ENSG00000259928 Gene

Genes around ENSG00000259928 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259928 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259928 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259928 Gene

Proteins for ENSG00000259928 Gene

Post-translational modifications for ENSG00000259928 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259928 Gene

Domains & Families for ENSG00000259928 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259928 Gene

Function for ENSG00000259928 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259928 Gene

Localization for ENSG00000259928 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259928 Gene

Pathways & Interactions for ENSG00000259928 Gene

PathCards logo

SuperPathways for ENSG00000259928 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259928 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259928 Gene

Drugs & Compounds for ENSG00000259928 Gene

No Compound Related Data Available

Transcripts for ENSG00000259928 Gene

mRNA/cDNA for ENSG00000259928 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259928 Gene

No ASD Table

Relevant External Links for ENSG00000259928 Gene

GeneLoc Exon Structure for
ENSG00000259928

Expression for ENSG00000259928 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259928 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259928 Gene

This gene is overexpressed in Testis (x41.3).
genes like me logo Genes that share expression patterns with ENSG00000259928: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259928 Gene

Orthologs for ENSG00000259928 Gene

Evolution for ENSG00000259928 Gene

ENSEMBL:
Gene Tree for ENSG00000259928 (if available)
TreeFam:
Gene Tree for ENSG00000259928 (if available)

No data available for Orthologs for ENSG00000259928 Gene

Paralogs for ENSG00000259928 Gene

No data available for Paralogs for ENSG00000259928 Gene

Variants for ENSG00000259928 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259928 Gene

Disorders for ENSG00000259928 Gene

No disorders were found for ENSG00000259928 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259928 Gene

Publications for ENSG00000259928 Gene

No publications were found for ENSG00000259928 Gene.

No data available for Mastermind for ENSG00000259928 Gene

Products for ENSG00000259928 Gene

Sources for ENSG00000259928 Gene