ENSG00000259899 Gene (RNA Gene)

 

GC16M012560
GIFtS:
7

Aliases for ENSG00000259899 Gene

Subcategory (RNA class) for ENSG00000259899 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259899 Gene

  • Novel Transcript, Antisense To A Novel Protein 5
  • NONHSAG018641 92
  • HSALNG0109648 167
  • Lnc-CPPED1-2 168
  • AC010333.2 5

External Ids for ENSG00000259899 Gene

Previous GeneCards Identifiers for ENSG00000259899 Gene

  • GC16M012654

Summaries for ENSG00000259899 Gene

GeneCards Summary for ENSG00000259899 Gene

ENSG00000259899 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259899 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259899 Gene

Genomics for ENSG00000259899 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259899 Gene

Promoters and enhancers for ENSG00000259899 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J012609 Enhancer 1.2 Ensembl ENCODE 520.7 -1.5 -1538 5.6 EP300 FOXK2 TCF12 POLR2G NCOR1 GTF2E2 JUND PHB2 ZNF639 ZNF10 ENSG00000259899 ENSG00000274834 ENSG00000238685 CPPED1 SNX29
GH16J012543 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.8 +65.7 65743 7.4 EP300 SIN3A SP1 NCOR1 ZIC2 KDM6A RELA MEF2C RCOR1 TGIF2 ENSG00000260601 ENSG00000259899 SNX29 NPIPB2 CPPED1 lnc-SHISA9-8
GH16J012529 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.3 +77.1 77144 13.8 ZBTB40 ZNF217 ZSCAN5C SIN3A SP1 FOS EP300 ZIC2 REST ZBTB10 ENSG00000261560 ENSG00000263307 COX6CP1 ENSG00000238685 ZC3H7A ENSG00000261216 ENSG00000259899 SNX29 ENSG00000260601 lnc-SHISA9-8
GH16J012591 Enhancer 0.3 Ensembl 10.8 +19.0 19043 1.6 FOXA2 RBBP5 piR-59297-227 ENSG00000259899 SNX29 SNN lnc-CPPED1-1
GH16J012550 Enhancer 0.3 Ensembl 6.1 +59.2 59243 2.4 ZNF316 CTCF SNX29 ENSG00000259899 ENSG00000259876 ENSG00000260601 LOC105371085
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259899 Gene

Genomic Locations for ENSG00000259899 Gene
chr16:12,560,756-12,611,044
(GRCh38/hg38)
Size:
50,289 bases
Orientation:
Minus strand
chr16:12,654,613-12,704,901
(GRCh37/hg19)
Size:
50,289 bases
Orientation:
Minus strand

Genomic View for ENSG00000259899 Gene

Genes around ENSG00000259899 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259899 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259899 Gene

Proteins for ENSG00000259899 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259899 Gene

Domains & Families for ENSG00000259899 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259899 Gene

Function for ENSG00000259899 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259899 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259899 Gene

Localization for ENSG00000259899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259899 Gene

Pathways & Interactions for ENSG00000259899 Gene

PathCards logo

SuperPathways for ENSG00000259899 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259899 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259899 Gene

Drugs & Compounds for ENSG00000259899 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259899 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259899 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259899 Gene

No ASD Table

Relevant External Links for ENSG00000259899 Gene

GeneLoc Exon Structure for
ENSG00000259899

Expression for ENSG00000259899 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259899 Gene

mRNA expression in normal human tissues for ENSG00000259899 Gene
mRNA expression by GTEx for ENSG00000259899 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259899 Gene

This gene is overexpressed in Testis (x8.0).
genes like me logo Genes that share expression patterns with ENSG00000259899: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259899 Gene

Orthologs for ENSG00000259899 Gene

Evolution for ENSG00000259899 Gene

ENSEMBL:
Gene Tree for ENSG00000259899 (if available)
TreeFam:
Gene Tree for ENSG00000259899 (if available)

No data available for Orthologs for ENSG00000259899 Gene

Paralogs for ENSG00000259899 Gene

No data available for Paralogs for ENSG00000259899 Gene

Variants for ENSG00000259899 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259899 Gene

Disorders for ENSG00000259899 Gene

No disorders were found for ENSG00000259899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259899 Gene

Publications for ENSG00000259899 Gene

No publications were found for ENSG00000259899 Gene.

No data available for Mastermind for ENSG00000259899 Gene

Products for ENSG00000259899 Gene

Sources for ENSG00000259899 Gene