Aliases for ENSG00000259884 Gene

Subcategory (RNA class) for ENSG00000259884 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259884 Gene

  • Novel Transcript 5
  • HSALNG0091146 167
  • NONHSAG011179 92
  • Lnc-KRT80-4 168
  • AC025259.3 5
  • NR4A1AS 2

External Ids for ENSG00000259884 Gene

Previous GeneCards Identifiers for ENSG00000259884 Gene

  • GC12M052452

Summaries for ENSG00000259884 Gene

GeneCards Summary for ENSG00000259884 Gene

ENSG00000259884 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259884 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259884 Gene

Genomics for ENSG00000259884 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259884 Gene

Promoters and enhancers for ENSG00000259884 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052049 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +2.0 1990 16.4 ZBTB40 EP300 NRF1 TCF12 POLR2G SP1 NCOR1 PHF8 FOS TEAD4 ENSG00000259884 MF688637 NR4A1 HNRNPA3P10 OR7E47P KRT6C EIF4B
GH12J052515 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 -461.5 -461541 11.4 ZIC2 POLR2A EP300 CTBP1 DEK ZNF316 MAFF ZNF263 FOS NR3C1 KRT5 HSALNG0091190 lnc-KRT6A-1 KRT6A KRT6C KRT71 KRT74 KRT84 KRT2 KRT4
GH12J052506 Enhancer 0.8 Ensembl ENCODE dbSUPER 5.9 -447.7 -447688 0.8 CTCF SMC3 YY1 RAD21 ZNF660 NR3C1 KRT6C KRT71 KRT82 KRT84 KRT78 KRT4 ENSG00000259884 KRT5 JA662198 KRT6A
GH12J052513 Enhancer 0.7 ENCODE dbSUPER 5.2 -454.5 -454463 1.2 POLR2A ZNF316 CEBPG NFE2 MAFG ZNF639 ATF4 CEBPB ATF3 BACH1 KRT6A KRT71 KRT6C KRT5 ENSG00000259884 lnc-KRT6A-1 JA662198
GH12J052066 Enhancer 0.7 Ensembl dbSUPER 0.4 -7.5 -7498 0.4 CREB1 ZBTB17 KAT7 CTCF ZNF513 RAD21 SMC3 ATF3 ZNF600 OR7E47P ATG101 lnc-ATG101-1 ENSG00000259884
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259884 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259884 Gene

Genomic Locations for ENSG00000259884 Gene
chr12:52,058,459-52,059,503
(GRCh38/hg38)
Size:
1,045 bases
Orientation:
Minus strand
chr12:52,452,243-52,453,287
(GRCh37/hg19)
Size:
1,045 bases
Orientation:
Minus strand

Genomic View for ENSG00000259884 Gene

Genes around ENSG00000259884 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259884 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259884 Gene

Proteins for ENSG00000259884 Gene

Post-translational modifications for ENSG00000259884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259884 Gene

Domains & Families for ENSG00000259884 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259884 Gene

Function for ENSG00000259884 Gene

Phenotypes From GWAS Catalog for ENSG00000259884 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259884 Gene

Localization for ENSG00000259884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259884 Gene

Pathways & Interactions for ENSG00000259884 Gene

PathCards logo

SuperPathways for ENSG00000259884 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259884 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259884 Gene

Drugs & Compounds for ENSG00000259884 Gene

No Compound Related Data Available

Transcripts for ENSG00000259884 Gene

mRNA/cDNA for ENSG00000259884 Gene

2 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259884 Gene

No ASD Table

Relevant External Links for ENSG00000259884 Gene

GeneLoc Exon Structure for
ENSG00000259884

Expression for ENSG00000259884 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259884 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259884 Gene

This gene is overexpressed in Ovary (x6.9) and Fallopian Tube (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000259884: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259884 Gene

Orthologs for ENSG00000259884 Gene

Evolution for ENSG00000259884 Gene

ENSEMBL:
Gene Tree for ENSG00000259884 (if available)
TreeFam:
Gene Tree for ENSG00000259884 (if available)

No data available for Orthologs for ENSG00000259884 Gene

Paralogs for ENSG00000259884 Gene

No data available for Paralogs for ENSG00000259884 Gene

Variants for ENSG00000259884 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259884 Gene

Disorders for ENSG00000259884 Gene

No disorders were found for ENSG00000259884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259884 Gene

Publications for ENSG00000259884 Gene

No publications were found for ENSG00000259884 Gene.

No data available for Mastermind for ENSG00000259884 Gene

Products for ENSG00000259884 Gene

Sources for ENSG00000259884 Gene