Aliases for ENSG00000259834 Gene

Subcategory (RNA class) for ENSG00000259834 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000259834 Gene

  • Novel Transcript 5
  • NONHSAG002387.2 91
  • HSALNG0005996 164
  • Lnc-KCNA3-3 165
  • AL365361.1 5

External Ids for ENSG00000259834 Gene

Previous GeneCards Identifiers for ENSG00000259834 Gene

  • GC01M111196

Summaries for ENSG00000259834 Gene

GeneCards Summary for ENSG00000259834 Gene

ENSG00000259834 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000259834 Gene

  • Potassium channel RNA editing signal

Additional gene information for ENSG00000259834 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259834 Gene

Genomics for ENSG00000259834 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259834 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110667 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.9 2883 8.1 RFX1 ZNF692 LARP7 PRDM1 POLR2A PATZ1 RCOR1 ZNF501 EZH2 ZNF600 KCNA3 KCNA2 CD53 RBM15 ENSG00000259834 lnc-KCNA2-1 LOC107985174 lnc-PROK1-4
GH01J110774 Enhancer 0.2 Ensembl 7.3 -99.7 -99683 0.2 LOC105378901 ENSG00000259834 piR-61532-015 KCNA3 CD53
GH01J110647 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.8 26782 3.1 PRDM10 ZNF629 ZNF692 ZNF174 PRDM1 RELA PATZ1 IKZF2 ZNF561 ZBTB44 lnc-KCNA2-1 ENSG00000258634 KCNA3 STRIP1 CD53 ENSG00000243960 LRIF1 LOC107985174 KCNA2 ENSG00000259834
GH01J110657 Enhancer 0.3 Ensembl dbSUPER 0.4 +17.4 17417 0.4 KCNA2 lnc-KCNA2-1 ENSG00000259834 KCNA3 LOC107985174 lnc-PROK1-4
GH01J110663 Enhancer 0.3 dbSUPER 0.4 +10.2 10242 1.7 ZNF585B UBE2FP3 ENSG00000259834 KCNA3 lnc-KCNA2-1 LOC107985174 KCNA2 lnc-PROK1-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259834 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259834 Gene

Genomic Locations for ENSG00000259834 Gene
chr1:110,653,544-110,674,818
(GRCh38/hg38)
Size:
21,275 bases
Orientation:
Minus strand
chr1:111,196,182-111,199,662
(GRCh37/hg19)
Size:
3,481 bases
Orientation:
Minus strand

Genomic View for ENSG00000259834 Gene

Genes around ENSG00000259834 on UCSC Golden Path with GeneCards custom track
ENSG00000259834 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259834 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259834 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259834 Gene

Proteins for ENSG00000259834 Gene

Post-translational modifications for ENSG00000259834 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259834 Gene

Domains & Families for ENSG00000259834 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259834 Gene

Function for ENSG00000259834 Gene

Phenotypes From GWAS Catalog for ENSG00000259834 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259834 Gene

Localization for ENSG00000259834 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259834 Gene

Pathways & Interactions for ENSG00000259834 Gene

PathCards logo

SuperPathways for ENSG00000259834 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259834 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259834 Gene

Drugs & Compounds for ENSG00000259834 Gene

No Compound Related Data Available

Transcripts for ENSG00000259834 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259834 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000048DB58_9606 lncRNA 3481 3

Ensembl: ENST00000566942 (view in UCSC) ,

LNCipedia: lnc-KCNA3-3:1,

NONCODE: NONHSAT005142.2,

URS00008BC224_9606 lncRNA 459 3

LncBook: HSALNT0012571,

LNCipedia: lnc-KCNA3-3:6,

NONCODE: NONHSAT005145.2,

URS00009C5909_9606 lncRNA 770 2

LncBook: HSALNT0012570,

NONCODE: NONHSAT152082.1,

URS0000D6DAB3_9606 lncRNA 9568 1

LNCipedia: lnc-KCNA3-3:4,

URS0000D6ED01_9606 lncRNA 9496 1

LNCipedia: lnc-KCNA3-3:5,

ENSG00000259834 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259834 Gene

No ASD Table

Relevant External Links for ENSG00000259834 Gene

GeneLoc Exon Structure for
ENSG00000259834

No data available for mRNA/cDNA for ENSG00000259834 Gene

Expression for ENSG00000259834 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259834 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259834 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000259834: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259834 Gene

Orthologs for ENSG00000259834 Gene

Evolution for ENSG00000259834 Gene

ENSEMBL:
Gene Tree for ENSG00000259834 (if available)
TreeFam:
Gene Tree for ENSG00000259834 (if available)

No data available for Orthologs for ENSG00000259834 Gene

Paralogs for ENSG00000259834 Gene

No data available for Paralogs for ENSG00000259834 Gene

Variants for ENSG00000259834 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259834 Gene

Disorders for ENSG00000259834 Gene

Additional Disease Information for ENSG00000259834

No disorders were found for ENSG00000259834 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259834 Gene

Publications for ENSG00000259834 Gene

No publications were found for ENSG00000259834 Gene.

No data available for Mastermind for ENSG00000259834 Gene

Products for ENSG00000259834 Gene

Sources for ENSG00000259834 Gene