ENSG00000259828 Gene (RNA Gene)

 

GC06P141447
GIFtS:
7

Aliases for ENSG00000259828 Gene

Subcategory (RNA class) for ENSG00000259828 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259828 Gene

  • Novel Transcript 5
  • HSALNG0053942 167
  • NONHSAG045008 92
  • AL355596.1 5
  • Lnc-GJE1-2 168

External Ids for ENSG00000259828 Gene

Previous GeneCards Identifiers for ENSG00000259828 Gene

  • GC06P141768

Summaries for ENSG00000259828 Gene

GeneCards Summary for ENSG00000259828 Gene

ENSG00000259828 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259828 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259828 Gene

Genomics for ENSG00000259828 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259828 Gene

Promoters and enhancers for ENSG00000259828 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J141446 Enhancer 0.4 Ensembl 509 -0.8 -810 0.4 EP300 POLR2A RAD21 ENSG00000259828 HSALNG0053949 lnc-GJE1-3 LOC105378029
GH06J141482 Enhancer 1.1 FANTOM5 ENCODE 13.5 +36.8 36796 3.3 RXRA SP1 FOS EP300 MEF2C RCOR1 TRIM22 NFYB BCL11A CBFB ENSG00000259828 RN7SKP106 RF00100-133 lnc-NMBR-7 piR-47960-032
GH06J141548 Enhancer 0.9 Ensembl ENCODE 10 +102.5 102452 1.9 EP300 TEAD1 FOXA2 FOS CEBPB MIER3 JUN JUND FOXP1 STAT3 ENSG00000259828 piR-48799-120 piR-57461-218
GH06J141562 Enhancer 0.6 ENCODE 10.9 +114.3 114348 0.2 ZNF217 TCF12 CUX1 GATAD2B CTBP1 FOXA2 MBD2 JUND GATA3 FOXA1 ENSG00000259828 piR-48799-120 piR-57461-218
GH06J141403 Enhancer 0.5 ENCODE 12.5 -43.2 -43175 1 KLF4 GATAD2B NR3C1 SPI1 FOXA1 GATA3 ENSG00000286452 LOC105378029 ENSG00000259828 lnc-GJE1-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259828 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259828 Gene

Genomic Locations for ENSG00000259828 Gene
chr6:141,447,011-141,451,006
(GRCh38/hg38)
Size:
3,996 bases
Orientation:
Plus strand
chr6:141,768,148-141,772,143
(GRCh37/hg19)
Size:
3,996 bases
Orientation:
Plus strand

Genomic View for ENSG00000259828 Gene

Genes around ENSG00000259828 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259828 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259828 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259828 Gene

Proteins for ENSG00000259828 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259828 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259828 Gene

Domains & Families for ENSG00000259828 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259828 Gene

Function for ENSG00000259828 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259828 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259828 Gene

Localization for ENSG00000259828 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259828 Gene

Pathways & Interactions for ENSG00000259828 Gene

PathCards logo

SuperPathways for ENSG00000259828 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259828 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259828 Gene

Drugs & Compounds for ENSG00000259828 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259828 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259828 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259828 Gene

No ASD Table

Relevant External Links for ENSG00000259828 Gene

GeneLoc Exon Structure for
ENSG00000259828

Expression for ENSG00000259828 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259828 Gene

mRNA expression in normal human tissues for ENSG00000259828 Gene
mRNA expression by GTEx for ENSG00000259828 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259828 Gene

This gene is overexpressed in Heart - Left Ventricle (x12.4), Heart - Atrial Appendage (x11.5), and Nerve - Tibial (x8.5).
genes like me logo Genes that share expression patterns with ENSG00000259828: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259828 Gene

Orthologs for ENSG00000259828 Gene

Evolution for ENSG00000259828 Gene

ENSEMBL:
Gene Tree for ENSG00000259828 (if available)
TreeFam:
Gene Tree for ENSG00000259828 (if available)

No data available for Orthologs for ENSG00000259828 Gene

Paralogs for ENSG00000259828 Gene

No data available for Paralogs for ENSG00000259828 Gene

Variants for ENSG00000259828 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259828 Gene

Disorders for ENSG00000259828 Gene

No disorders were found for ENSG00000259828 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259828 Gene

Publications for ENSG00000259828 Gene

No publications were found for ENSG00000259828 Gene.

No data available for Mastermind for ENSG00000259828 Gene

Products for ENSG00000259828 Gene

Sources for ENSG00000259828 Gene