Aliases for ENSG00000259820 Gene

Subcategory (RNA class) for ENSG00000259820 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259820 Gene

  • Novel Transcript 5
  • NONHSAG051357 92
  • HSALNG0068816 167
  • AC083843.3 5
  • Lnc-ZFAT-1 168

External Ids for ENSG00000259820 Gene

Previous GeneCards Identifiers for ENSG00000259820 Gene

  • GC08M135804

Summaries for ENSG00000259820 Gene

GeneCards Summary for ENSG00000259820 Gene

ENSG00000259820 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000259820 Gene

  • mir-30 microRNA precursor

Additional gene information for ENSG00000259820 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259820 Gene

Genomics for ENSG00000259820 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259820 Gene

Promoters and enhancers for ENSG00000259820 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J134797 Enhancer 0.3 Ensembl 516.8 +0.6 579 1 CEBPG SMARCE1 ENSG00000259820 piR-51831 lnc-KHDRBS3-16 LOC102723694
GH08J134830 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 15.7 -33.7 -33709 4.4 ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 TCF12 POLR2G USF1 SP1 ENSG00000254028 LOC102723694 ENSG00000259820 ZFAT MIR30D MIR30B NONHSAG051359.2
GH08J134814 Enhancer 0.7 Ensembl ENCODE 17.8 -17.3 -17333 2.8 FOXA2 FOXP1 KLF9 RXRA HNF4A GATAD2A FOXA1 SP1 FOXJ2 CEBPA ENSG00000259820 ZFAT NCRNA00250 MIR30D NONHSAG051359.2 LOC102723694
GH08J134799 Enhancer 1 Ensembl ENCODE 8.9 -4.1 -4129 5.2 JUND TEAD1 FOXA2 FOS TFDP1 SAP130 CEBPB POLR2A ZBTB33 FOSL1 MIR30B lnc-KHDRBS3-15 ENSG00000259820 MIR30D lnc-KHDRBS3-16 LOC102723694
GH08J134791 Enhancer 0.7 Ensembl ENCODE 11.7 +5.4 5371 3.4 ATF2 ZNF316 MYNN SPI1 POLR2A MEIS2 ATF7 piR-51831 ENSG00000259820 ZFAT ENSG00000279518 lnc-KHDRBS3-16 LOC102723694
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259820 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259820 Gene

Genomic Locations for ENSG00000259820 Gene
chr8:134,792,020-134,798,272
(GRCh38/hg38)
Size:
6,253 bases
Orientation:
Minus strand
chr8:135,804,263-135,810,515
(GRCh37/hg19)
Size:
6,253 bases
Orientation:
Minus strand

Genomic View for ENSG00000259820 Gene

Genes around ENSG00000259820 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259820 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259820 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259820 Gene

Proteins for ENSG00000259820 Gene

Post-translational modifications for ENSG00000259820 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259820 Gene

Domains & Families for ENSG00000259820 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259820 Gene

Function for ENSG00000259820 Gene

Phenotypes From GWAS Catalog for ENSG00000259820 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259820 Gene

Localization for ENSG00000259820 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259820 Gene

Pathways & Interactions for ENSG00000259820 Gene

PathCards logo

SuperPathways for ENSG00000259820 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259820 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259820 Gene

Drugs & Compounds for ENSG00000259820 Gene

No Compound Related Data Available

Transcripts for ENSG00000259820 Gene

mRNA/cDNA for ENSG00000259820 Gene

9 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259820 Gene

No ASD Table

Relevant External Links for ENSG00000259820 Gene

GeneLoc Exon Structure for
ENSG00000259820

Expression for ENSG00000259820 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259820 Gene

genes like me logo Genes that share expression patterns with ENSG00000259820: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259820 Gene

Orthologs for ENSG00000259820 Gene

Evolution for ENSG00000259820 Gene

ENSEMBL:
Gene Tree for ENSG00000259820 (if available)
TreeFam:
Gene Tree for ENSG00000259820 (if available)

No data available for Orthologs for ENSG00000259820 Gene

Paralogs for ENSG00000259820 Gene

No data available for Paralogs for ENSG00000259820 Gene

Variants for ENSG00000259820 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259820 Gene

Disorders for ENSG00000259820 Gene

No disorders were found for ENSG00000259820 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259820 Gene

Publications for ENSG00000259820 Gene

No publications were found for ENSG00000259820 Gene.

No data available for Mastermind for ENSG00000259820 Gene

Products for ENSG00000259820 Gene

Sources for ENSG00000259820 Gene