ENSG00000259813 Gene (RNA Gene)

 

GC16P088696
GIFtS:
8

Aliases for ENSG00000259813 Gene

Subcategory (RNA class) for ENSG00000259813 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000259813 Gene

  • Novel Transcript, Antisense To RNF166 5
  • HSALNG0113530 167
  • NONHSAG020295 92
  • AC138028.3 5

External Ids for ENSG00000259813 Gene

Previous GeneCards Identifiers for ENSG00000259813 Gene

  • GC16P088763

Summaries for ENSG00000259813 Gene

GeneCards Summary for ENSG00000259813 Gene

ENSG00000259813 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259813 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259813 Gene

Genomics for ENSG00000259813 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259813 Gene

Promoters and enhancers for ENSG00000259813 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J088695 Enhancer 0.5 ENCODE 500.7 -1.2 -1209 0.1 ESRRA NFIC POLR2G ZFHX2 NFIB AGO2 EGR2 HNRNPL RBFOX2 ENSG00000259813 piR-47857
GH16J088698 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +6.8 6763 10.3 EP300 HNRNPK ZBTB40 ZNF217 CTCF SIN3A NRF1 MYC POLR2G USF1 RNF166 CTU2 lnc-PIEZO1-1 SNAI3-AS1 ENSG00000259877 SNAI3 PIEZO1 ENSG00000260121 CDK10 ZC3H18
GH16J088691 Enhancer 0.6 ENCODE 0.7 -4.1 -4081 2 TCF12 USF2 SMARCA5 USF1 EBF1 IKZF1 ZBTB7A STAT1 VEZF1 ZBTB33 RNF166 MVD CYBA PIEZO1 ENSG00000259813 piR-47857
GH16J088689 Promoter 0.4 Ensembl 0.4 -6.7 -6700 0.4 ZNF770 MVD CYBA piR-47857 ENSG00000259813
GH16J088693 Enhancer 0.2 ENCODE 0.7 -3.0 -2993 0.2 ENSG00000259813 piR-47857
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259813 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259813 Gene

Genomic Locations for ENSG00000259813 Gene
chr16:88,696,501-88,698,610
(GRCh38/hg38)
Size:
2,110 bases
Orientation:
Plus strand
chr16:88,762,909-88,765,018
(GRCh37/hg19)
Size:
2,110 bases
Orientation:
Plus strand

Genomic View for ENSG00000259813 Gene

Genes around ENSG00000259813 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259813 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259813 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259813 Gene

Proteins for ENSG00000259813 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259813 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259813 Gene

Domains & Families for ENSG00000259813 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259813 Gene

Function for ENSG00000259813 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259813 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259813 Gene

Localization for ENSG00000259813 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259813 Gene

Pathways & Interactions for ENSG00000259813 Gene

PathCards logo

SuperPathways for ENSG00000259813 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259813 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259813 Gene

Drugs & Compounds for ENSG00000259813 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259813 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259813 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259813 Gene

No ASD Table

Relevant External Links for ENSG00000259813 Gene

GeneLoc Exon Structure for
ENSG00000259813

Expression for ENSG00000259813 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259813 Gene

mRNA expression in normal human tissues for ENSG00000259813 Gene
mRNA expression by GTEx for ENSG00000259813 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259813 Gene

This gene is overexpressed in Whole Blood (x13.7).
genes like me logo Genes that share expression patterns with ENSG00000259813: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259813 Gene

Orthologs for ENSG00000259813 Gene

Evolution for ENSG00000259813 Gene

ENSEMBL:
Gene Tree for ENSG00000259813 (if available)
TreeFam:
Gene Tree for ENSG00000259813 (if available)

No data available for Orthologs for ENSG00000259813 Gene

Paralogs for ENSG00000259813 Gene

No data available for Paralogs for ENSG00000259813 Gene

Variants for ENSG00000259813 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259813 Gene

Disorders for ENSG00000259813 Gene

No disorders were found for ENSG00000259813 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259813 Gene

Publications for ENSG00000259813 Gene

No publications were found for ENSG00000259813 Gene.

No data available for Mastermind for ENSG00000259813 Gene

Products for ENSG00000259813 Gene

Sources for ENSG00000259813 Gene