Aliases for ENSG00000259797 Gene

Subcategory (RNA class) for ENSG00000259797 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259797 Gene

  • Novel Transcript, Intronic To PRMT7 5
  • NONHSAG019794.2 91
  • HSALNG0112276 164
  • Lnc-SLC7A6-1 165
  • AC020978.1 5

External Ids for ENSG00000259797 Gene

Previous GeneCards Identifiers for ENSG00000259797 Gene

  • GC16P068350
  • GC16P068322
  • GC16P068335

Summaries for ENSG00000259797 Gene

GeneCards Summary for ENSG00000259797 Gene

ENSG00000259797 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259797 Gene

Genomics for ENSG00000259797 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J068315 Promoter 0.3 EPDnew 600.7 -0.9 -854 0.1 ENSG00000259797 PRMT7 SNODB1630 lnc-SLC7A6-3 SMPD3 L13708-003
GH16J068314 Enhancer 0.3 Ensembl 600.7 -1.9 -1900 0.2 KDM1A ENSG00000259797 SNODB1630 DUS2 PRMT7 lnc-SLC7A6-3 SMPD3 L13708-003
GH16J069070 Enhancer 1.2 Ensembl ENCODE dbSUPER 21 +755.8 755842 3.7 ZNF629 RCOR2 PRDM1 ZIC2 ZNF776 ZSCAN4 REST ZNF311 ZNF600 FOXJ2 PRMT7 NFAT5 ENSG00000260290 SNTB2 ZFP90 ENSG00000259797 CHTF8 COG8 ENSG00000263276 NIP7
GH16J067600 Enhancer 0.8 ENCODE 11.6 -715.6 -715588 0.2 PRDM10 ZNF629 ZNF692 TARDBP PRDM1 ZSCAN4 PATZ1 ZNF239 ZNF600 KLF9 NAE1 CTCF KIAA0895L ENSG00000260465 PRMT7 DUS2 PLEKHG4 ZDHHC1 CARMIL2 ENSG00000259797
GH16J068318 Enhancer 0.7 ENCODE 0.7 +2.6 2588 1.1 TCF12 IKZF2 TRIM22 PKNOX1 SCRT2 SIN3A DPF2 RELB ZNF10 RUNX3 piR-37170-027 PRMT7 SLC7A6 ENSG00000259797 SMPD3 L13708-003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259797 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259797 Gene

Genomic Locations for ENSG00000259797 Gene
chr16:68,316,801-68,319,036
(GRCh38/hg38)
Size:
2,236 bases
Orientation:
Plus strand
chr16:68,350,704-68,352,939
(GRCh37/hg19)
Size:
2,236 bases
Orientation:
Plus strand

Genomic View for ENSG00000259797 Gene

Genes around ENSG00000259797 on UCSC Golden Path with GeneCards custom track
ENSG00000259797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259797 Gene

Proteins for ENSG00000259797 Gene

Post-translational modifications for ENSG00000259797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259797 Gene

Domains & Families for ENSG00000259797 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259797 Gene

Function for ENSG00000259797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259797 Gene

Localization for ENSG00000259797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259797 Gene

Pathways & Interactions for ENSG00000259797 Gene

PathCards logo

SuperPathways for ENSG00000259797 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259797 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259797 Gene

Drugs & Compounds for ENSG00000259797 Gene

No Compound Related Data Available

Transcripts for ENSG00000259797 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259797 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000243FFF_9606 lncRNA 428 4

Ensembl: ENST00000563203 (view in UCSC) ,

LncBook: HSALNT0232775,

LNCipedia: lnc-SLC7A6-1:1,

NONCODE: NONHSAT143262.2,

ENSG00000259797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259797 Gene

No ASD Table

Relevant External Links for ENSG00000259797 Gene

GeneLoc Exon Structure for
ENSG00000259797

No data available for mRNA/cDNA for ENSG00000259797 Gene

Expression for ENSG00000259797 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259797 Gene

genes like me logo Genes that share expression patterns with ENSG00000259797: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259797 Gene

Orthologs for ENSG00000259797 Gene

Evolution for ENSG00000259797 Gene

ENSEMBL:
Gene Tree for ENSG00000259797 (if available)
TreeFam:
Gene Tree for ENSG00000259797 (if available)

No data available for Orthologs for ENSG00000259797 Gene

Paralogs for ENSG00000259797 Gene

No data available for Paralogs for ENSG00000259797 Gene

Variants for ENSG00000259797 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259797 Gene

Disorders for ENSG00000259797 Gene

Additional Disease Information for ENSG00000259797

No disorders were found for ENSG00000259797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259797 Gene

Publications for ENSG00000259797 Gene

No publications were found for ENSG00000259797 Gene.

No data available for Mastermind for ENSG00000259797 Gene

Products for ENSG00000259797 Gene

Sources for ENSG00000259797 Gene