Aliases for ENSG00000259793 Gene

Subcategory (RNA class) for ENSG00000259793 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259793 Gene

  • Novel Transcript, Antisense To DGKD 5
  • NONHSAG030819 92
  • HSALNG0023087 167
  • Lnc-USP40-1 168
  • AC013726.1 5

External Ids for ENSG00000259793 Gene

Additional External Ids for ENSG00000259793 Gene

Previous GeneCards Identifiers for ENSG00000259793 Gene

  • GC02M234259

Summaries for ENSG00000259793 Gene

GeneCards Summary for ENSG00000259793 Gene

ENSG00000259793 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259793 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259793 Gene

Genomics for ENSG00000259793 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259793 Gene

Promoters and enhancers for ENSG00000259793 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J233348 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.0 -958 11.5 ZNF217 EP300 CTCF NRF1 TCF12 POLR2G NCOR1 PHF8 JUND FOS DGKD ENSG00000259793 ATG16L1 USP40 SAG SCARNA5 INPP5D
GH02J233330 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +21.3 21316 7.4 ZBTB40 TEAD4 ZIC2 POLR2A NR2F2 HDAC2 TCF12 CREB1 CBFB USF1 SAG DGKD ATG16L1 SCARNA6 SCARNA5 ENSG00000259793 NONHSAG030816.2
GH02J233339 Enhancer 0.6 Ensembl 0.4 +14.0 14015 4 MXI1 RBM25 ESRRA CEBPB USF1 ZNF335 CTCF ZNF146 BHLHE40 ZMYM3 SAG DGKD ATG16L1 ENSG00000259793 NONHSAG030816.2
GH02J233311 Enhancer 0.7 FANTOM5 Ensembl 0.3 +41.3 41315 1.8 USF1 RAD21 ZNF48 RAD51 NFYB NR3C1 USF2 CTCF PKNOX1 SAG NONHSAG030816.2 ENSG00000259793
GH02J233341 Enhancer 0.3 Ensembl 0.4 +11.2 11215 0.8 MEIS2 HLF SAG ATG16L1 ENSG00000259793 NONHSAG030816.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259793 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259793 Gene

Genomic Locations for ENSG00000259793 Gene
chr2:233,351,132-233,353,416
(GRCh38/hg38)
Size:
2,285 bases
Orientation:
Minus strand
chr2:234,259,778-234,262,062
(GRCh37/hg19)
Size:
2,285 bases
Orientation:
Minus strand

Genomic View for ENSG00000259793 Gene

Genes around ENSG00000259793 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259793 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259793 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259793 Gene

Proteins for ENSG00000259793 Gene

Post-translational modifications for ENSG00000259793 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259793 Gene

Domains & Families for ENSG00000259793 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259793 Gene

Function for ENSG00000259793 Gene

Phenotypes From GWAS Catalog for ENSG00000259793 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259793 Gene

Localization for ENSG00000259793 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259793 Gene

Pathways & Interactions for ENSG00000259793 Gene

PathCards logo

SuperPathways for ENSG00000259793 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259793 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259793 Gene

Drugs & Compounds for ENSG00000259793 Gene

No Compound Related Data Available

Transcripts for ENSG00000259793 Gene

mRNA/cDNA for ENSG00000259793 Gene

2 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259793 Gene

No ASD Table

Relevant External Links for ENSG00000259793 Gene

GeneLoc Exon Structure for
ENSG00000259793

Expression for ENSG00000259793 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259793 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259793 Gene

This gene is overexpressed in Prostate (x6.8), Brain - Cerebellar Hemisphere (x5.9), and Brain - Cerebellum (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000259793: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259793 Gene

Orthologs for ENSG00000259793 Gene

Evolution for ENSG00000259793 Gene

ENSEMBL:
Gene Tree for ENSG00000259793 (if available)
TreeFam:
Gene Tree for ENSG00000259793 (if available)

No data available for Orthologs for ENSG00000259793 Gene

Paralogs for ENSG00000259793 Gene

No data available for Paralogs for ENSG00000259793 Gene

Variants for ENSG00000259793 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259793 Gene

Disorders for ENSG00000259793 Gene

No disorders were found for ENSG00000259793 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259793 Gene

Publications for ENSG00000259793 Gene

No publications were found for ENSG00000259793 Gene.

No data available for Mastermind for ENSG00000259793 Gene

Products for ENSG00000259793 Gene

Sources for ENSG00000259793 Gene