Aliases for ENSG00000259788 Gene

Subcategory (RNA class) for ENSG00000259788 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259788 Gene

  • Novel Transcript, Antisense To UAP1 5
  • NONHSAG003289.2 91
  • HSALNG0008008 164
  • Lnc-SH2D1B-1 165
  • AL596325.1 5

External Ids for ENSG00000259788 Gene

Previous GeneCards Identifiers for ENSG00000259788 Gene

  • GC01M162530

Summaries for ENSG00000259788 Gene

GeneCards Summary for ENSG00000259788 Gene

ENSG00000259788 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259788 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259788 Gene

Genomics for ENSG00000259788 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J162560 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.2 -1179 4.9 SP1 CREB1 GATAD2A HNRNPL PRDM10 ZNF629 REST TFE3 IKZF1 NFKBIZ ENSG00000259788 LOC102724358 UAP1 DUSP12 DDR2 UHMK1 OLFML2B MN309007
GH01J162547 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.4 +12.8 12821 1.7 ZNF316 MAFG ZNF169 ESRRA EMSY DUSP12 UHMK1 SH2D1B HSD17B7 UQCRBP2 ENSG00000259788 UAP1
GH01J162552 Enhancer 0.7 Ensembl ENCODE 0.4 +8.8 8815 1.5 NCOR1 STAT5A NR2F1 TAL1 NR2F6 DPF2 CEBPB TEAD4 CBFA2T3 ARID1B ENSG00000259788 LOC102724358 UAP1 UQCRBP2 UHMK1
GH01J162551 Enhancer 0.5 Ensembl 0.4 +10.2 10155 0.4 CEBPB EHMT2 WT1 HLF ZNF644 UQCRBP2 ENSG00000259788 UAP1 UHMK1
GH01J162554 Enhancer 0.3 Ensembl 0.4 +6.5 6455 0.2 ZSCAN29 ENSG00000259788 LOC102724358 UAP1 UQCRBP2 UHMK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259788 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259788 Gene

Genomic Locations for ENSG00000259788 Gene
chr1:162,552,522-162,561,356
(GRCh38/hg38)
Size:
8,835 bases
Orientation:
Minus strand
chr1:162,530,017-162,531,098
(GRCh37/hg19)
Size:
1,082 bases
Orientation:
Minus strand

Genomic View for ENSG00000259788 Gene

Genes around ENSG00000259788 on UCSC Golden Path with GeneCards custom track
ENSG00000259788 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259788 Gene

Proteins for ENSG00000259788 Gene

Post-translational modifications for ENSG00000259788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259788 Gene

Domains & Families for ENSG00000259788 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259788 Gene

Function for ENSG00000259788 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259788 Gene

Localization for ENSG00000259788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259788 Gene

Pathways & Interactions for ENSG00000259788 Gene

PathCards logo

SuperPathways for ENSG00000259788 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259788 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259788 Gene

Drugs & Compounds for ENSG00000259788 Gene

No Compound Related Data Available

Transcripts for ENSG00000259788 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259788 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000016F886_9606 lncRNA 1082 3

Ensembl: ENST00000563991 (view in UCSC) ,

LNCipedia: lnc-SH2D1B-1:2,

NONCODE: NONHSAT007222.2,

URS00008B64C5_9606 lncRNA 299 3

LncBook: HSALNT0016608,

LNCipedia: lnc-SH2D1B-1:1,

NONCODE: NONHSAT007223.2,

URS0000D59F41_9606 lncRNA 1127 1

LNCipedia: lnc-SH2D1B-1:4,

URS0000D5DDCD_9606 lncRNA 418 1

LNCipedia: lnc-SH2D1B-1:3,

ENSG00000259788 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259788 Gene

No ASD Table

Relevant External Links for ENSG00000259788 Gene

GeneLoc Exon Structure for
ENSG00000259788

No data available for mRNA/cDNA for ENSG00000259788 Gene

Expression for ENSG00000259788 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259788 Gene

This gene is overexpressed in Testis (x35.6).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259788 Gene

Orthologs for ENSG00000259788 Gene

Evolution for ENSG00000259788 Gene

ENSEMBL:
Gene Tree for ENSG00000259788 (if available)
TreeFam:
Gene Tree for ENSG00000259788 (if available)

No data available for Orthologs for ENSG00000259788 Gene

Paralogs for ENSG00000259788 Gene

No data available for Paralogs for ENSG00000259788 Gene

Variants for ENSG00000259788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259788 Gene

Disorders for ENSG00000259788 Gene

No disorders were found for ENSG00000259788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259788 Gene

Publications for ENSG00000259788 Gene

No publications were found for ENSG00000259788 Gene.

No data available for Mastermind for ENSG00000259788 Gene

Products for ENSG00000259788 Gene

Sources for ENSG00000259788 Gene