Aliases for ENSG00000259768 Gene

Subcategory (RNA class) for ENSG00000259768 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259768 Gene

  • Novel Transcript, Antisense To ZFHX3 5
  • NONHSAG019942.2 91
  • HSALNG0112586 164
  • Lnc-DHX38-27 165
  • Lnc-DHX38-4 165
  • AC004943.2 5

External Ids for ENSG00000259768 Gene

Previous GeneCards Identifiers for ENSG00000259768 Gene

  • GC16P072779
  • GC16P072699

Summaries for ENSG00000259768 Gene

GeneCards Summary for ENSG00000259768 Gene

ENSG00000259768 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000259768 Gene

Additional gene information for ENSG00000259768 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259768 Gene

Genomics for ENSG00000259768 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259768 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J072663 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.2 -223 3.4 SP1 CREB1 PRDM10 RFX1 IKZF1 NFKBIZ POLR2A FOS JUND GABPA ENSG00000259768 LINC01572 LOC107984814 piR-51907 IST1 DHX38 AP1G1
GH16J072222 Enhancer 0.3 Ensembl 4.8 -442.7 -442722 0.4 CHD4 KDM1A PMFBP1 HPR ENSG00000259768 ENSG00000261673 HSALNG0112544 MN297383 LOC107984814
GH16J072677 Enhancer 0.8 ENCODE 0.4 +12.9 12897 1.4 CREB1 GATAD2A ATF7 TFE3 SOX13 NFKBIZ FOXA1 RXRB CEBPA ETS1 RF00066-075 RNU7-90P lnc-ZFHX3-2 ENSG00000259768 LOC107984814
GH16J072704 Enhancer 0.8 VISTA UCNEbase 0.3 +40.3 40337 1.6 POLR2A SMARCA4 piR-57387-017 piR-48799-046 LOC107984814 ENSG00000259768
GH16J072722 Enhancer 0.8 Ensembl ENCODE 0.2 +57.8 57778 2.6 TEAD4 PRDM1 ZIC2 POLR2A ZBTB44 CEBPB TCF7L2 CTCF OSR2 YY1 HPR KRT18P18 piR-35674-199 ENSG00000259768 LOC107984814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259768 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259768 Gene

Genomic Locations for ENSG00000259768 Gene
chr16:72,665,123-72,822,781
(GRCh38/hg38)
Size:
157,659 bases
Orientation:
Plus strand
chr16:72,699,069-72,821,143
(GRCh37/hg19)
Size:
122,075 bases
Orientation:
Plus strand

Genomic View for ENSG00000259768 Gene

Genes around ENSG00000259768 on UCSC Golden Path with GeneCards custom track
ENSG00000259768 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259768 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259768 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259768 Gene

Proteins for ENSG00000259768 Gene

Post-translational modifications for ENSG00000259768 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259768 Gene

Domains & Families for ENSG00000259768 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259768 Gene

Function for ENSG00000259768 Gene

Phenotypes From GWAS Catalog for ENSG00000259768 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259768 Gene

Localization for ENSG00000259768 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259768 Gene

Pathways & Interactions for ENSG00000259768 Gene

PathCards logo

SuperPathways for ENSG00000259768 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259768 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259768 Gene

Drugs & Compounds for ENSG00000259768 Gene

No Compound Related Data Available

Transcripts for ENSG00000259768 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259768 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E1B1E_9606 lncRNA 4842 1

Ensembl: ENST00000563328 (view in UCSC) ,

URS0000EEFF89_9606 lncRNA 2409 1

Ensembl: ENST00000668995 (view in UCSC) ,

URS0000EEFAC9_9606 lncRNA 2401 1

Ensembl: ENST00000653037 (view in UCSC) ,

URS00008B617A_9606 lncRNA 707 3

LncBook: HSALNT0233337,

LNCipedia: lnc-DHX38-27:5,

NONCODE: NONHSAT143601.2,

URS0000D5C116_9606 lncRNA 538 2

LncBook: HSALNT0233324,

LNCipedia: lnc-DHX38-27:1,

ENSG00000259768 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259768 Gene

No ASD Table

Relevant External Links for ENSG00000259768 Gene

GeneLoc Exon Structure for
ENSG00000259768

No data available for mRNA/cDNA for ENSG00000259768 Gene

Expression for ENSG00000259768 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259768 Gene

mRNA expression in normal human tissues for ENSG00000259768 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259768 Gene

This gene is overexpressed in Testis (x8.0).
genes like me logo Genes that share expression patterns with ENSG00000259768: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259768 Gene

Orthologs for ENSG00000259768 Gene

Evolution for ENSG00000259768 Gene

ENSEMBL:
Gene Tree for ENSG00000259768 (if available)
TreeFam:
Gene Tree for ENSG00000259768 (if available)

No data available for Orthologs for ENSG00000259768 Gene

Paralogs for ENSG00000259768 Gene

No data available for Paralogs for ENSG00000259768 Gene

Variants for ENSG00000259768 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259768 Gene

Disorders for ENSG00000259768 Gene

Additional Disease Information for ENSG00000259768

No disorders were found for ENSG00000259768 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259768 Gene

Publications for ENSG00000259768 Gene

No publications were found for ENSG00000259768 Gene.

No data available for Mastermind for ENSG00000259768 Gene

Products for ENSG00000259768 Gene

Sources for ENSG00000259768 Gene