Aliases for ENSG00000259755 Gene

Subcategory (RNA class) for ENSG00000259755 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000259755 Gene

  • Novel Transcript, Antisense To LRRK1 5
  • NONHSAG018110.2 91
  • Lnc-CHSY1-3 165
  • AC090907.2 5

External Ids for ENSG00000259755 Gene

Previous GeneCards Identifiers for ENSG00000259755 Gene

  • GC15M101590

Summaries for ENSG00000259755 Gene

GeneCards Summary for ENSG00000259755 Gene

ENSG00000259755 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259755 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259755 Gene

Genomics for ENSG00000259755 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259755 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J101085 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 18 -3.5 -3466 7.4 ARHGAP35 HNRNPL GATAD2A CTCF TFE3 IKZF1 NFKBIZ ZNF692 RCOR2 BACH1 LINS1 ENSG00000259755 ASB7 LRRK1 WASH3P ENSG00000259381 CHSY1 SNRPA1 PRKXP1 ENSG00000270127
GH15J101077 Enhancer 0.6 Ensembl ENCODE dbSUPER 10.3 +7.4 7363 2.6 FOXA2 piR-30444-119 CHSY1 ENSG00000259755 LOC105371026 LRRK1
GH15J101080 Enhancer 0.2 dbSUPER 16.4 +4.9 4923 0.9 ENSG00000259755 CHSY1 LRRK1 piR-30444-119 LOC105371026
GH15J101094 Enhancer 0.2 Ensembl 9.5 -8.5 -8534 0.4 CHSY1 ENSG00000259755 piR-30668 lnc-CHSY1-2 LOC105371026 LRRK1
GH15J101067 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +16.3 16265 5.6 HNRNPL GATAD2A CTCF ZBTB33 ATF7 TEAD4 TFE3 SOX13 NFKBIZ KDM1A LRRK1 piR-59039 ENSG00000287892 ENSG00000259755 LOC105371026 CHSY1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259755 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259755 Gene

Genomic Locations for ENSG00000259755 Gene
chr15:101,050,732-101,086,066
(GRCh38/hg38)
Size:
35,335 bases
Orientation:
Minus strand
chr15:101,590,937-101,626,271
(GRCh37/hg19)
Size:
35,335 bases
Orientation:
Minus strand

Genomic View for ENSG00000259755 Gene

Genes around ENSG00000259755 on UCSC Golden Path with GeneCards custom track
ENSG00000259755 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259755 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259755 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259755 Gene

Proteins for ENSG00000259755 Gene

Post-translational modifications for ENSG00000259755 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259755 Gene

Domains & Families for ENSG00000259755 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259755 Gene

Function for ENSG00000259755 Gene

Phenotypes From GWAS Catalog for ENSG00000259755 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259755 Gene

Localization for ENSG00000259755 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259755 Gene

Pathways & Interactions for ENSG00000259755 Gene

PathCards logo

SuperPathways for ENSG00000259755 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259755 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259755 Gene

Drugs & Compounds for ENSG00000259755 Gene

No Compound Related Data Available

Transcripts for ENSG00000259755 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259755 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000518109_9606 lncRNA 720 3

Ensembl: ENST00000559857 (view in UCSC) ,

LNCipedia: lnc-CHSY1-3:1,

NONCODE: NONHSAT051148.2,

URS00008B7DA3_9606 lncRNA 622 2

LNCipedia: lnc-CHSY1-3:2,

NONCODE: NONHSAT051147.2,

ENSG00000259755 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259755 Gene

No ASD Table

Relevant External Links for ENSG00000259755 Gene

GeneLoc Exon Structure for
ENSG00000259755

No data available for mRNA/cDNA for ENSG00000259755 Gene

Expression for ENSG00000259755 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259755 Gene

genes like me logo Genes that share expression patterns with ENSG00000259755: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259755 Gene

Orthologs for ENSG00000259755 Gene

Evolution for ENSG00000259755 Gene

ENSEMBL:
Gene Tree for ENSG00000259755 (if available)
TreeFam:
Gene Tree for ENSG00000259755 (if available)

No data available for Orthologs for ENSG00000259755 Gene

Paralogs for ENSG00000259755 Gene

No data available for Paralogs for ENSG00000259755 Gene

Variants for ENSG00000259755 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259755 Gene

Disorders for ENSG00000259755 Gene

Additional Disease Information for ENSG00000259755

No disorders were found for ENSG00000259755 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259755 Gene

Publications for ENSG00000259755 Gene

No publications were found for ENSG00000259755 Gene.

No data available for Mastermind for ENSG00000259755 Gene

Products for ENSG00000259755 Gene

Sources for ENSG00000259755 Gene