Aliases for ENSG00000259730 Gene

Subcategory (RNA class) for ENSG00000259730 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259730 Gene

  • Novel Transcript 5
  • NONHSAG016812.2 91
  • HSALNG0105726 164
  • Lnc-SEMA6D-1 165
  • AC092078.1 5

External Ids for ENSG00000259730 Gene

Previous GeneCards Identifiers for ENSG00000259730 Gene

  • GC15P048236

Summaries for ENSG00000259730 Gene

GeneCards Summary for ENSG00000259730 Gene

ENSG00000259730 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259730 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259730 Gene

Genomics for ENSG00000259730 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259730 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J047945 Enhancer 0.6 Ensembl CraniofacialAtlas 600.7 +2.0 1956 0.8 POLR2A SCRT2 GLIS1 ENSG00000259730 LOC102724553 LOC105370805 ENSG00000259754 SLC24A5 SEMA6D
GH15J047944 Enhancer 0.3 Ensembl 600.7 +0.9 857 0.2 CTCF GATA3 ENSG00000259730 LOC102724553 LOC105370805 ENSG00000259754 SLC24A5 SEMA6D
GH15J047961 Enhancer 0.9 FANTOM5 ENCODE 0.4 +17.9 17873 0.7 SP1 BACH1 FOXA1 IKZF2 RELA EED DPF2 RELB RUNX3 BCLAF1 SEMA6D ENSG00000259730 LOC102724553 ENSG00000287439 LOC105370805 ENSG00000259754 SLC24A5
GH15J047988 Enhancer 0.8 Ensembl ENCODE 0.3 +43.6 43556 1.6 CTCF RAD21 TRIM22 CEBPB SMC3 JUND DEK ELF1 RFX5 ZNF654 ENSG00000287439 LOC102724553 ENSG00000259730 LOC105370805 SLC24A5 ENSG00000259754 SEMA6D
GH15J047952 Enhancer 0.4 Ensembl 0.4 +8.6 8557 1.6 ZIC2 ZSCAN4 SMARCA4 ENSG00000259730 LOC102724553 LOC105370805 ENSG00000259754 SLC24A5 SEMA6D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259730 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259730 Gene

Genomic Locations for ENSG00000259730 Gene
chr15:47,944,044-47,949,509
(GRCh38/hg38)
Size:
5,466 bases
Orientation:
Plus strand
chr15:48,236,241-48,241,706
(GRCh37/hg19)
Size:
5,466 bases
Orientation:
Plus strand

Genomic View for ENSG00000259730 Gene

Genes around ENSG00000259730 on UCSC Golden Path with GeneCards custom track
ENSG00000259730 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259730 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259730 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259730 Gene

Proteins for ENSG00000259730 Gene

Post-translational modifications for ENSG00000259730 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259730 Gene

Domains & Families for ENSG00000259730 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259730 Gene

Function for ENSG00000259730 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259730 Gene

Localization for ENSG00000259730 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259730 Gene

Pathways & Interactions for ENSG00000259730 Gene

PathCards logo

SuperPathways for ENSG00000259730 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259730 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259730 Gene

Drugs & Compounds for ENSG00000259730 Gene

No Compound Related Data Available

Transcripts for ENSG00000259730 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259730 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001370A1_9606 lncRNA 325 4

Ensembl: ENST00000558370 (view in UCSC) ,

LncBook: HSALNT0219920,

LNCipedia: lnc-SEMA6D-1:1,

NONCODE: NONHSAT042319.2,

ENSG00000259730 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259730 Gene

No ASD Table

Relevant External Links for ENSG00000259730 Gene

GeneLoc Exon Structure for
ENSG00000259730

No data available for mRNA/cDNA for ENSG00000259730 Gene

Expression for ENSG00000259730 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259730 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259730 Gene

This gene is overexpressed in Kidney - Cortex (x26.2), Testis (x11.1), and Vagina (x11.1).
genes like me logo Genes that share expression patterns with ENSG00000259730: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259730 Gene

Orthologs for ENSG00000259730 Gene

Evolution for ENSG00000259730 Gene

ENSEMBL:
Gene Tree for ENSG00000259730 (if available)
TreeFam:
Gene Tree for ENSG00000259730 (if available)

No data available for Orthologs for ENSG00000259730 Gene

Paralogs for ENSG00000259730 Gene

No data available for Paralogs for ENSG00000259730 Gene

Variants for ENSG00000259730 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259730 Gene

Disorders for ENSG00000259730 Gene

No disorders were found for ENSG00000259730 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259730 Gene

Publications for ENSG00000259730 Gene

No publications were found for ENSG00000259730 Gene.

No data available for Mastermind for ENSG00000259730 Gene

Products for ENSG00000259730 Gene

Sources for ENSG00000259730 Gene