Aliases for ENSG00000259708 Gene

Subcategory (RNA class) for ENSG00000259708 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259708 Gene

  • Novel Transcript, Antisense To DNAJA4 5
  • NONHSAG017555.2 91
  • HSALNG0107445 164
  • Lnc-ACSBG1-1 165
  • AC090607.3 5

External Ids for ENSG00000259708 Gene

Previous GeneCards Identifiers for ENSG00000259708 Gene

  • GC15M078542

Summaries for ENSG00000259708 Gene

GeneCards Summary for ENSG00000259708 Gene

ENSG00000259708 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259708 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259708 Gene

Genomics for ENSG00000259708 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259708 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J078263 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.6 -1574 4.1 LARP7 ZNF24 CTCF ZFX POLR2A SMARCC1 JUND E2F1 ELK1 SREBF2 DNAJA4 ENSG00000259708 Hsa-Mir-574_5p-023 LOC105370911 CRABP1 IREB2 ENSG00000259562 LOC645752 WDR61
GH15J078242 Enhancer 0.8 Ensembl ENCODE 9 +20.5 20456 3 CTCF IKZF1 NR2C1 CBX3 ZNF766 NR2C2 SMC3 NFIC RAD21 MNT ACSBG1 lnc-ACSBG1-2 piR-33422-155 piR-47152 ENSG00000259708 DNAJA4 lnc-WDR61-1 CIB2
GH15J078246 Enhancer 0.5 Ensembl 8.8 +15.9 15855 3.4 NCOR1 TAL1 TCF12 ZBTB33 CBFA2T2 CBFA2T3 WDR61 CRABP1 ENSG00000259708 ENSG00000259562 ACSBG1 LOC645752 piR-58297-181 DNAJA4
GH15J078260 Enhancer 0.3 Ensembl 0.7 +3.1 3055 1.8 POLR2A PHF20 DNAJA4 CSPG4P13 ENSG00000259708 LOC105370911 ACSBG1 piR-58297-181
GH15J078257 Enhancer 0.2 Ensembl 0.4 +6.2 6155 0.4 CRABP1 SH2D7 TBC1D2B ENSG00000199633 DNAJA4 ENSG00000259708 LOC105370911 ACSBG1 piR-58297-181
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259708 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259708 Gene

Genomic Locations for ENSG00000259708 Gene
chr15:78,250,502-78,264,156
(GRCh38/hg38)
Size:
13,655 bases
Orientation:
Minus strand
chr15:78,542,844-78,556,498
(GRCh37/hg19)
Size:
13,655 bases
Orientation:
Minus strand

Genomic View for ENSG00000259708 Gene

Genes around ENSG00000259708 on UCSC Golden Path with GeneCards custom track
ENSG00000259708 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259708 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259708 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259708 Gene

Proteins for ENSG00000259708 Gene

Post-translational modifications for ENSG00000259708 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259708 Gene

Domains & Families for ENSG00000259708 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259708 Gene

Function for ENSG00000259708 Gene

Phenotypes From GWAS Catalog for ENSG00000259708 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259708 Gene

Localization for ENSG00000259708 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259708 Gene

Pathways & Interactions for ENSG00000259708 Gene

PathCards logo

SuperPathways for ENSG00000259708 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259708 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259708 Gene

Drugs & Compounds for ENSG00000259708 Gene

No Compound Related Data Available

Transcripts for ENSG00000259708 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259708 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C5204_9606 lncRNA 383 4

Ensembl: ENST00000558971 (view in UCSC) ,

LncBook: HSALNT0223127,

LNCipedia: lnc-ACSBG1-1:1,

NONCODE: NONHSAT047551.2,

URS00001DDB7B_9606 lncRNA 388 3

Ensembl: ENST00000559954 (view in UCSC) ,

LNCipedia: lnc-ACSBG1-1:2,

NONCODE: NONHSAT047550.2,

URS00009B792E_9606 lncRNA 222 2

LncBook: HSALNT0223128,

NONCODE: NONHSAT171811.1,

ENSG00000259708 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259708 Gene

No ASD Table

Relevant External Links for ENSG00000259708 Gene

GeneLoc Exon Structure for
ENSG00000259708

No data available for mRNA/cDNA for ENSG00000259708 Gene

Expression for ENSG00000259708 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259708 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259708 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000259708: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259708 Gene

Orthologs for ENSG00000259708 Gene

Evolution for ENSG00000259708 Gene

ENSEMBL:
Gene Tree for ENSG00000259708 (if available)
TreeFam:
Gene Tree for ENSG00000259708 (if available)

No data available for Orthologs for ENSG00000259708 Gene

Paralogs for ENSG00000259708 Gene

No data available for Paralogs for ENSG00000259708 Gene

Variants for ENSG00000259708 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259708 Gene

Disorders for ENSG00000259708 Gene

No disorders were found for ENSG00000259708 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259708 Gene

Publications for ENSG00000259708 Gene

No publications were found for ENSG00000259708 Gene.

No data available for Mastermind for ENSG00000259708 Gene

Products for ENSG00000259708 Gene

Sources for ENSG00000259708 Gene