ENSG00000259684 Gene (RNA Gene)

 

GC15P050557
GIFtS:
6

Aliases for ENSG00000259684 Gene

Subcategory (RNA class) for ENSG00000259684 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259684 Gene

  • Novel Transcript, Antisense To TRPM7 5
  • NONHSAG016869 92
  • HSALNG0105879 167
  • AC084756.1 5
  • Lnc-USP8-1 168

External Ids for ENSG00000259684 Gene

Previous GeneCards Identifiers for ENSG00000259684 Gene

  • GC15P050850

Summaries for ENSG00000259684 Gene

GeneCards Summary for ENSG00000259684 Gene

ENSG00000259684 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259684 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259684 Gene

Genomics for ENSG00000259684 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259684 Gene

Promoters and enhancers for ENSG00000259684 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH15J050556 Enhancer 0.2 Ensembl 500.7 -0.5 -500 0.6 ENSG00000259684 SPPL2A AP4E1 TRPM7 RN7SL354P USP50 lnc-TRPM7-1
GH15J051103 Enhancer 0.9 Ensembl ENCODE 12 +546.6 546649 1.9 FOS ZNF10 ATF2 PBX2 NR2F2 ZNF335 IKZF3 JUND ZNF843 HIC1 TNFAIP8L3 ENSG00000259684 ENSG00000259715 SPPL2A TRPM7 MIR4713HG lnc-AP4E1-6 PIRC66
GH15J050853 Enhancer 1 Ensembl ENCODE 4.4 +297.3 297281 2.1 ZNF217 SP1 CLOCK CUX1 CHD1 GATAD2B CTBP1 HCFC1 SIN3A ESRRA SPPL2A AP4E1 ENSG00000259684 piR-49508 piR-50443-129 ENSG00000273674
GH15J050083 Enhancer 0.5 Ensembl dbSUPER 4.1 -473.5 -473500 2.6 CTBP1 POLR2A ATP8B4 ENSG00000259684 piR-38351-170 lnc-HDC-3 RF00001-123 RNA5SP394
GH15J050447 Enhancer 0.2 Ensembl 4.9 -109.1 -109100 1.8 RPL32P30 USP50 USP8 ENSG00000259684 piR-52079-064 RNA5SP395 lnc-TRPM7-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259684 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259684 Gene

Genomic Locations for ENSG00000259684 Gene
chr15:50,557,601-50,560,500
(GRCh38/hg38)
Size:
2,900 bases
Orientation:
Plus strand
chr15:50,849,798-50,852,697
(GRCh37/hg19)
Size:
2,900 bases
Orientation:
Plus strand

Genomic View for ENSG00000259684 Gene

Genes around ENSG00000259684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259684 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259684 Gene

Proteins for ENSG00000259684 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259684 Gene

Domains & Families for ENSG00000259684 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259684 Gene

Function for ENSG00000259684 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259684 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259684 Gene

Localization for ENSG00000259684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259684 Gene

Pathways & Interactions for ENSG00000259684 Gene

PathCards logo

SuperPathways for ENSG00000259684 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259684 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259684 Gene

Drugs & Compounds for ENSG00000259684 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259684 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259684 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259684 Gene

No ASD Table

Relevant External Links for ENSG00000259684 Gene

GeneLoc Exon Structure for
ENSG00000259684

Expression for ENSG00000259684 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259684 Gene

mRNA expression in normal human tissues for ENSG00000259684 Gene
mRNA expression by GTEx for ENSG00000259684 Gene
genes like me logo Genes that share expression patterns with ENSG00000259684: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259684 Gene

Orthologs for ENSG00000259684 Gene

Evolution for ENSG00000259684 Gene

ENSEMBL:
Gene Tree for ENSG00000259684 (if available)
TreeFam:
Gene Tree for ENSG00000259684 (if available)

No data available for Orthologs for ENSG00000259684 Gene

Paralogs for ENSG00000259684 Gene

No data available for Paralogs for ENSG00000259684 Gene

Variants for ENSG00000259684 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259684 Gene

Disorders for ENSG00000259684 Gene

No disorders were found for ENSG00000259684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259684 Gene

Publications for ENSG00000259684 Gene

No publications were found for ENSG00000259684 Gene.

No data available for Mastermind for ENSG00000259684 Gene

Products for ENSG00000259684 Gene

Sources for ENSG00000259684 Gene