Aliases for ENSG00000259654 Gene

Subcategory (RNA class) for ENSG00000259654 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259654 Gene

  • Novel Transcript, Antisense To SEC11A 5
  • NONHSAG017731 92
  • HSALNG0107814 167
  • Lnc-ZSCAN2-1 168
  • AC115102.1 5

External Ids for ENSG00000259654 Gene

Previous GeneCards Identifiers for ENSG00000259654 Gene

  • GC15P085229

Summaries for ENSG00000259654 Gene

GeneCards Summary for ENSG00000259654 Gene

ENSG00000259654 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259654 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259654 Gene

Genomics for ENSG00000259654 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259654 Gene

Promoters and enhancers for ENSG00000259654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J084681 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -1.9 -1883 4.4 ZSCAN5C JUND FOS ZNF639 SKI WT1 CEBPB ZBTB17 FOSL2 JUN ENSG00000259654 NMB SEC11A WDR73 GOLGA6L3 ALPK3 ENSG00000259683 ZNF592 PDE8A lnc-NMB-1
GH15J084687 Enhancer 0.3 Ensembl dbSUPER 500.7 +1.9 1917 0.4 ENSG00000259654 NMB WDR73 SEC11A ALPK3 LINC00933
GH15J084714 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +30.0 30017 5 EP300 ZBTB40 ZNF217 SIN3A NRF1 TCF12 MYC POLR2G SP1 BCLAF1 SEC11A lnc-ZNF592-6 NMB GOLGA6L5P GOLGA6L4 UBE2Q2P1 LINC00933 CSPG4P12 ENSG00000259683 ALPK3
GH15J084695 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 0.4 +14.6 14617 17 OSR2 NR2F2 ZNF316 ZBTB17 POLR2A USF1 RAD21 MITF TOE1 RXRA SEC11A NMB WDR73 ALPK3 GOLGA6L4 GOLGA6L5P GOLGA6L3 ZNF592 ENSG00000200991 RN7SL331P
GH15J084689 Enhancer 0.5 dbSUPER 0.7 +4.9 4896 1.8 ZNF585B ZSCAN5A ZBTB33 ZMYM3 CC2D1A ZNF121 ARID3A SEC11A NMB WDR73 ZNF592 ALPK3 ENSG00000200991 ENSG00000259654
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259654 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259654 Gene

Genomic Locations for ENSG00000259654 Gene
chr15:84,685,884-84,686,946
(GRCh38/hg38)
Size:
1,063 bases
Orientation:
Plus strand
chr15:85,229,115-85,230,177
(GRCh37/hg19)
Size:
1,063 bases
Orientation:
Plus strand

Genomic View for ENSG00000259654 Gene

Genes around ENSG00000259654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259654 Gene

Proteins for ENSG00000259654 Gene

Post-translational modifications for ENSG00000259654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259654 Gene

Domains & Families for ENSG00000259654 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259654 Gene

Function for ENSG00000259654 Gene

Phenotypes From GWAS Catalog for ENSG00000259654 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259654 Gene

Localization for ENSG00000259654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259654 Gene

Pathways & Interactions for ENSG00000259654 Gene

PathCards logo

SuperPathways for ENSG00000259654 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259654 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259654 Gene

Drugs & Compounds for ENSG00000259654 Gene

No Compound Related Data Available

Transcripts for ENSG00000259654 Gene

mRNA/cDNA for ENSG00000259654 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259654 Gene

No ASD Table

Relevant External Links for ENSG00000259654 Gene

GeneLoc Exon Structure for
ENSG00000259654

Expression for ENSG00000259654 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259654 Gene

genes like me logo Genes that share expression patterns with ENSG00000259654: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259654 Gene

Orthologs for ENSG00000259654 Gene

Evolution for ENSG00000259654 Gene

ENSEMBL:
Gene Tree for ENSG00000259654 (if available)
TreeFam:
Gene Tree for ENSG00000259654 (if available)

No data available for Orthologs for ENSG00000259654 Gene

Paralogs for ENSG00000259654 Gene

No data available for Paralogs for ENSG00000259654 Gene

Variants for ENSG00000259654 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259654 Gene

Disorders for ENSG00000259654 Gene

No disorders were found for ENSG00000259654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259654 Gene

Publications for ENSG00000259654 Gene

No publications were found for ENSG00000259654 Gene.

No data available for Mastermind for ENSG00000259654 Gene

Products for ENSG00000259654 Gene

Sources for ENSG00000259654 Gene