Aliases for ENSG00000259647 Gene

Subcategory (RNA class) for ENSG00000259647 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000259647 Gene

  • Novel Transcript 5
  • NONHSAG016395.2 91
  • AC111152.2 5
  • Lnc-TJP1-1 165

External Ids for ENSG00000259647 Gene

Previous GeneCards Identifiers for ENSG00000259647 Gene

  • GC15M030297

Summaries for ENSG00000259647 Gene

GeneCards Summary for ENSG00000259647 Gene

ENSG00000259647 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259647 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259647 Gene

Genomics for ENSG00000259647 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259647 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J030045 Promoter 0.4 Ensembl 600.7 +0.3 347 0.2 ZIC2 ENSG00000260174 ENSG00000259647 SYNGR2P1 piR-30338 piR-35723-001 piR-30771 piR-37409 piR-39364 piR-34438 piR-45202
GH15J030038 Enhancer 0.8 Ensembl ENCODE 0.4 +6.6 6584 1.2 SP1 ATF3 YY1 ZBTB33 JUND NR2F2 TCF7L2 RAD21 HNF4A RXRA ENSG00000229389 ENSG00000259647 SYNGR2P1 piR-61240-106 GOLGA8J TJP1
GH15J030063 Enhancer 0.8 Ensembl ENCODE 0.4 -18.6 -18628 3.3 ZNF629 ZBTB44 CEBPB ZSCAN5C EP300 ZFHX2 TCF7L2 ATF4 ZNF366 ZNF843 ENSG00000229389 KR153194-055 lnc-TJP1-2 ENSG00000259647 GOLGA8J TJP1
GH15J030042 Enhancer 0.3 Ensembl 0.7 +2.9 2948 0.6 CTCF RXRA ENSG00000260174 SYNGR2P1 piR-30338 piR-37409 piR-39364 ENSG00000229389 ENSG00000259647 piR-61240-106 GOLGA8J TJP1
GH15J030000 Enhancer 0.3 dbSUPER 0.3 +42.7 42674 5.9 ZBTB20 ZNF366 ENSG00000187951 NCAPGP2 TJP1 ENSG00000259647 GOLGA8J
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259647 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259647 Gene

Genomic Locations for ENSG00000259647 Gene
chr15:30,005,443-30,045,848
(GRCh38/hg38)
Size:
40,406 bases
Orientation:
Minus strand
chr15:30,297,646-30,338,051
(GRCh37/hg19)
Size:
40,406 bases
Orientation:
Minus strand

Genomic View for ENSG00000259647 Gene

Genes around ENSG00000259647 on UCSC Golden Path with GeneCards custom track
ENSG00000259647 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259647 Gene

Proteins for ENSG00000259647 Gene

Post-translational modifications for ENSG00000259647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259647 Gene

Domains & Families for ENSG00000259647 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259647 Gene

Function for ENSG00000259647 Gene

Phenotypes From GWAS Catalog for ENSG00000259647 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259647 Gene

Localization for ENSG00000259647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259647 Gene

Pathways & Interactions for ENSG00000259647 Gene

PathCards logo

SuperPathways for ENSG00000259647 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259647 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259647 Gene

Drugs & Compounds for ENSG00000259647 Gene

No Compound Related Data Available

Transcripts for ENSG00000259647 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259647 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060D6E8_9606 lncRNA 485 3

Ensembl: ENST00000561392 (view in UCSC) ,

LNCipedia: lnc-TJP1-1:1,

NONCODE: NONHSAT041313.2,

ENSG00000259647 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259647 Gene

No ASD Table

Relevant External Links for ENSG00000259647 Gene

GeneLoc Exon Structure for
ENSG00000259647

No data available for mRNA/cDNA for ENSG00000259647 Gene

Expression for ENSG00000259647 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259647 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259647 Gene

This gene is overexpressed in Testis (x22.7) and Lung (x6.1).
genes like me logo Genes that share expression patterns with ENSG00000259647: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259647 Gene

Orthologs for ENSG00000259647 Gene

Evolution for ENSG00000259647 Gene

ENSEMBL:
Gene Tree for ENSG00000259647 (if available)
TreeFam:
Gene Tree for ENSG00000259647 (if available)

No data available for Orthologs for ENSG00000259647 Gene

Paralogs for ENSG00000259647 Gene

No data available for Paralogs for ENSG00000259647 Gene

Variants for ENSG00000259647 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259647 Gene

Disorders for ENSG00000259647 Gene

Additional Disease Information for ENSG00000259647

No disorders were found for ENSG00000259647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259647 Gene

Publications for ENSG00000259647 Gene

No publications were found for ENSG00000259647 Gene.

No data available for Mastermind for ENSG00000259647 Gene

Products for ENSG00000259647 Gene

Sources for ENSG00000259647 Gene