Aliases for ENSG00000259647 Gene

Subcategory (RNA class) for ENSG00000259647 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000259647 Gene

  • Novel Transcript 5
  • NONHSAG016395 94
  • AC111152.2 5
  • Lnc-TJP1-1 170

External Ids for ENSG00000259647 Gene

Previous GeneCards Identifiers for ENSG00000259647 Gene

  • GC15M030297

Summaries for ENSG00000259647 Gene

GeneCards Summary for ENSG00000259647 Gene

ENSG00000259647 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259647 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259647 Gene

Genomics for ENSG00000259647 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259647 Gene

Promoters and enhancers for ENSG00000259647 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J030045 Promoter 0.4 Ensembl 750.6 +0.3 347 0.2 ZIC2 ENSG00000259647 ENSG00000260174 SYNGR2P1 piR-30771 piR-39364 piR-37409 piR-34438 piR-30338 piR-35723-001 piR-45202
GH15J030038 Enhancer 0.8 Ensembl ENCODE 0.4 +6.6 6584 1.2 RAD21 SP1 RXRA JUND ATF3 YY1 ZBTB33 TCF7L2 NR2F2 HNF4A ENSG00000229389 ENSG00000259647 SYNGR2P1 piR-61240-106
GH15J030063 Enhancer 0.8 Ensembl ENCODE 0.4 -18.6 -18628 3.3 ZNF133 ZNF121 MAFK ZNF629 CEBPB ZSCAN5C EP300 TCF7L2 ZFHX2 ZNF366 ENSG00000247728 FAN1 ENSG00000229389 KR153194-055 lnc-TJP1-2 ENSG00000259647
GH15J030042 Enhancer 0.3 Ensembl 0.6 +2.9 2948 0.6 CTCF RXRA ENSG00000260174 SYNGR2P1 piR-39364 piR-37409 piR-30338 ENSG00000229389 ENSG00000259647 piR-61240-106
GH15J030000 Enhancer 0.3 dbSUPER 0.3 +42.7 42674 5.9 ZBTB20 ZNF366 ENSG00000187951 NCAPGP2 TJP1 ENSG00000259647
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259647 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259647 Gene

Genomic Locations for ENSG00000259647 Gene
chr15:30,005,443-30,045,848
(GRCh38/hg38)
Size:
40,406 bases
Orientation:
Minus strand
chr15:30,297,646-30,338,051
(GRCh37/hg19)
Size:
40,406 bases
Orientation:
Minus strand

Genomic View for ENSG00000259647 Gene

Genes around ENSG00000259647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259647 Gene

Proteins for ENSG00000259647 Gene

Post-translational modifications for ENSG00000259647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259647 Gene

Domains & Families for ENSG00000259647 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259647 Gene

Function for ENSG00000259647 Gene

Phenotypes From GWAS Catalog for ENSG00000259647 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259647 Gene

Localization for ENSG00000259647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259647 Gene

Pathways & Interactions for ENSG00000259647 Gene

PathCards logo

SuperPathways for ENSG00000259647 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000259647 Gene

Drugs & Compounds for ENSG00000259647 Gene

No Compound Related Data Available

Transcripts for ENSG00000259647 Gene

mRNA/cDNA for ENSG00000259647 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259647 Gene

No ASD Table

Relevant External Links for ENSG00000259647 Gene

GeneLoc Exon Structure for
ENSG00000259647

Expression for ENSG00000259647 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000259647 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259647 Gene

This gene is overexpressed in Testis (x22.7) and Lung (x6.1).
genes like me logo Genes that share expression patterns with ENSG00000259647: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259647 Gene

Orthologs for ENSG00000259647 Gene

Evolution for ENSG00000259647 Gene

ENSEMBL:
Gene Tree for ENSG00000259647 (if available)
TreeFam:
Gene Tree for ENSG00000259647 (if available)

No data available for Orthologs for ENSG00000259647 Gene

Paralogs for ENSG00000259647 Gene

No data available for Paralogs for ENSG00000259647 Gene

Variants for ENSG00000259647 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259647 Gene

Disorders for ENSG00000259647 Gene

No disorders were found for ENSG00000259647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259647 Gene

Publications for ENSG00000259647 Gene

No publications were found for ENSG00000259647 Gene.

No data available for External Links for ENSG00000259647 Gene

Products for ENSG00000259647 Gene

Sources for ENSG00000259647 Gene