Aliases for ENSG00000259617 Gene

Subcategory (RNA class) for ENSG00000259617 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259617 Gene

  • Novel Transcript, Antisense To INO80 5
  • NONHSAG016629.2 91
  • HSALNG0105325 164
  • Lnc-CHAC1-2 165
  • AC020661.3 5

External Ids for ENSG00000259617 Gene

Previous GeneCards Identifiers for ENSG00000259617 Gene

  • GC15P041291

Summaries for ENSG00000259617 Gene

GeneCards Summary for ENSG00000259617 Gene

ENSG00000259617 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259617 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259617 Gene

Genomics for ENSG00000259617 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040998 Enhancer 0.6 Ensembl ENCODE 600.7 +0.3 293 2.4 SP1 FOS FOSL2 MAFK SIN3A NR3C1 ENSG00000259617 LOC105376713 NDUFAF1 INO80 KNSTRN ENSG00000259463 CHAC1
GH15J041114 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 4.8 +116.6 116626 3.4 BRCA1 SP1 CREB1 GATAD2A HNRNPL ATF7 TEAD4 PRDM10 ZNF629 ZNF512 INO80 MF281430-022 lnc-CHP1-6 MGA RAD51-AS1 ENSG00000260814 NDUFAF1 ENSG00000259211 CCDC32 MAPKBP1
GH15J041000 Enhancer 0.8 Ensembl ENCODE 0.7 +2.4 2351 1.4 FOXA1 SP1 FOXA2 USF1 YY1 JUND NR2F2 STAT1 RAD21 BCL6 NDUFAF1 INO80 ENSG00000259617 LOC105376713 ENSG00000259463 CHAC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259617 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259617 Gene

Genomic Locations for ENSG00000259617 Gene
chr15:40,999,274-41,004,865
(GRCh38/hg38)
Size:
5,592 bases
Orientation:
Plus strand
chr15:41,291,472-41,297,063
(GRCh37/hg19)
Size:
5,592 bases
Orientation:
Plus strand

Genomic View for ENSG00000259617 Gene

Genes around ENSG00000259617 on UCSC Golden Path with GeneCards custom track
ENSG00000259617 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259617 Gene

Proteins for ENSG00000259617 Gene

Post-translational modifications for ENSG00000259617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259617 Gene

Domains & Families for ENSG00000259617 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259617 Gene

Function for ENSG00000259617 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259617 Gene

Localization for ENSG00000259617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259617 Gene

Pathways & Interactions for ENSG00000259617 Gene

PathCards logo

SuperPathways for ENSG00000259617 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259617 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259617 Gene

Drugs & Compounds for ENSG00000259617 Gene

No Compound Related Data Available

Transcripts for ENSG00000259617 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259617 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003AEFA9_9606 lncRNA 500 4

Ensembl: ENST00000561388 (view in UCSC) ,

LncBook: HSALNT0219152,

LNCipedia: lnc-CHAC1-2:1,

NONCODE: NONHSAT041906.2,

ENSG00000259617 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259617 Gene

No ASD Table

Relevant External Links for ENSG00000259617 Gene

GeneLoc Exon Structure for
ENSG00000259617

No data available for mRNA/cDNA for ENSG00000259617 Gene

Expression for ENSG00000259617 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259617 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259617 Gene

This gene is overexpressed in Muscle - Skeletal (x8.0).
genes like me logo Genes that share expression patterns with ENSG00000259617: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259617 Gene

Orthologs for ENSG00000259617 Gene

Evolution for ENSG00000259617 Gene

ENSEMBL:
Gene Tree for ENSG00000259617 (if available)
TreeFam:
Gene Tree for ENSG00000259617 (if available)

No data available for Orthologs for ENSG00000259617 Gene

Paralogs for ENSG00000259617 Gene

No data available for Paralogs for ENSG00000259617 Gene

Variants for ENSG00000259617 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259617 Gene

Disorders for ENSG00000259617 Gene

Additional Disease Information for ENSG00000259617

No disorders were found for ENSG00000259617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259617 Gene

Publications for ENSG00000259617 Gene

No publications were found for ENSG00000259617 Gene.

No data available for Mastermind for ENSG00000259617 Gene

Products for ENSG00000259617 Gene

Sources for ENSG00000259617 Gene