Aliases for ENSG00000259495 Gene

Subcategory (RNA class) for ENSG00000259495 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259495 Gene

  • Novel Transcript 5
  • NONHSAG017613.2 91
  • HSALNG0107595 164
  • HSALNG0107589 164
  • AC016705.2 5
  • LINC00927 165

External Ids for ENSG00000259495 Gene

Previous GeneCards Identifiers for ENSG00000259495 Gene

  • GC15M080637

Summaries for ENSG00000259495 Gene

GeneCards Summary for ENSG00000259495 Gene

ENSG00000259495 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259495 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259495 Gene

Genomics for ENSG00000259495 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259495 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J080403 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.4 -363 2.6 KDM1A ZIC2 POLR2A PATZ1 ZNF600 ZNF341 ZFX ZNF561 SCRT2 ZBTB20 ARNT2 ENSG00000259495 HSALNG0107599 ABHD17C
GH15J080402 Enhancer 0.4 CraniofacialAtlas dbSUPER 600.7 +1.3 1279 0.4 TAF1 ARNT2 ENSG00000259495 CTXND1 lnc-ARNT2-1
GH15J079964 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.5 +435.9 435943 7.6 SP1 ZNF512 RFX1 POLR2A BACH1 FOXA1 LARP7 STAT3 ZNF143 RELA BCL2A1 MTHFS ST20-MTHFS ST20 RNU6-667P ENSG00000259495 ZFAND6 RF00017-1865 NONHSAG017602.2
GH15J079680 Enhancer 0.7 Ensembl ENCODE 5 +722.7 722737 3.6 KDM1A JUND NR3C1 FOS ELF1 FOSL2 ZNF189 BHLHE40 MAFK BCL3 ENSG00000259495 HNRNPCP3 LOC390618 ENSG00000260674 MTHFS MINAR1
GH15J079890 Enhancer 0.3 Ensembl 4.9 +512.8 512837 1.4 PRDM1 BHLHE40 MTHFS ST20 BCL2A1 RNU6-667P ENSG00000259495 ENSG00000286813 ENSG00000279394 ST20-MTHFS MINAR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259495 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259495 Gene

Genomic Locations for ENSG00000259495 Gene
chr15:80,344,848-80,404,338
(GRCh38/hg38)
Size:
59,491 bases
Orientation:
Minus strand
chr15:80,637,195-80,695,917
(GRCh37/hg19)
Size:
58,723 bases
Orientation:
Minus strand

Genomic View for ENSG00000259495 Gene

Genes around ENSG00000259495 on UCSC Golden Path with GeneCards custom track
ENSG00000259495 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259495 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259495 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259495 Gene

Proteins for ENSG00000259495 Gene

Post-translational modifications for ENSG00000259495 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259495 Gene

Domains & Families for ENSG00000259495 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259495 Gene

Function for ENSG00000259495 Gene

Phenotypes From GWAS Catalog for ENSG00000259495 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259495 Gene

Localization for ENSG00000259495 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259495 Gene

Pathways & Interactions for ENSG00000259495 Gene

PathCards logo

SuperPathways for ENSG00000259495 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259495 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259495 Gene

Drugs & Compounds for ENSG00000259495 Gene

No Compound Related Data Available

Transcripts for ENSG00000259495 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259495 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007BF445_9606 lncRNA 436 4

Ensembl: ENST00000559267 (view in UCSC) ,

LncBook: HSALNT0223366,

LNCipedia: LINC00927:36,

NONCODE: NONHSAT047695.2,

URS00007BBEDF_9606 lncRNA 6878 2

Ensembl: ENST00000559008 (view in UCSC) ,

LNCipedia: LINC00927:35,

URS0000EED87E_9606 lncRNA 998 1

Ensembl: ENST00000656160 (view in UCSC) ,

URS0000EF534C_9606 lncRNA 675 1

Ensembl: ENST00000653750 (view in UCSC) ,

URS00008BEF21_9606 lncRNA 7486 3

LncBook: HSALNT0223372,

LNCipedia: LINC00927:31,

NONCODE: NONHSAT047701.2,

ENSG00000259495 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259495 Gene

No ASD Table

Relevant External Links for ENSG00000259495 Gene

GeneLoc Exon Structure for
ENSG00000259495

No data available for mRNA/cDNA for ENSG00000259495 Gene

Expression for ENSG00000259495 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259495 Gene

mRNA expression in normal human tissues for ENSG00000259495 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259495 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x4.8), Brain - Spinal cord (cervical c-1) (x4.7), Brain - Putamen (basal ganglia) (x4.6), and Brain - Nucleus accumbens (basal ganglia) (x4.6).
genes like me logo Genes that share expression patterns with ENSG00000259495: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259495 Gene

Orthologs for ENSG00000259495 Gene

Evolution for ENSG00000259495 Gene

ENSEMBL:
Gene Tree for ENSG00000259495 (if available)
TreeFam:
Gene Tree for ENSG00000259495 (if available)

No data available for Orthologs for ENSG00000259495 Gene

Paralogs for ENSG00000259495 Gene

No data available for Paralogs for ENSG00000259495 Gene

Variants for ENSG00000259495 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259495 Gene

Disorders for ENSG00000259495 Gene

Additional Disease Information for ENSG00000259495

No disorders were found for ENSG00000259495 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259495 Gene

Publications for ENSG00000259495 Gene

No publications were found for ENSG00000259495 Gene.

No data available for Mastermind for ENSG00000259495 Gene

Products for ENSG00000259495 Gene

Sources for ENSG00000259495 Gene