Aliases for ENSG00000259488 Gene

Subcategory (RNA class) for ENSG00000259488 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259488 Gene

  • Novel Transcript, Antisense To DUT 5
  • NONHSAG016822.2 91
  • HSALNG0105748 164
  • AC023355.2 5
  • Lnc-FBN1-3 165

External Ids for ENSG00000259488 Gene

Previous GeneCards Identifiers for ENSG00000259488 Gene

  • GC15M048604

Summaries for ENSG00000259488 Gene

GeneCards Summary for ENSG00000259488 Gene

ENSG00000259488 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000259488 Gene

Additional gene information for ENSG00000259488 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259488 Gene

Genomics for ENSG00000259488 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259488 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J048330 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 610.6 -0.2 -245 4.6 SP1 GATAD2A PRDM10 ZNF629 REST TFE3 SIX5 POLR2A BACH1 JUND DUT ENSG00000259488 SLC12A1 ENSG00000259235 FBN1 lnc-DUT-1 piR-50444-127
GH15J049043 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.4 -713.5 -713545 4 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 LEF1 IKZF1 SECISBP2L lnc-COPS2-6 DTWD1 CEP152 DUT SHC4 ENSG00000259488 FAM227B RF00017-1780 RN7SL577P
GH15J047735 Enhancer 1 Ensembl ENCODE dbSUPER 13.8 +595.2 595175 3 CEBPG ATF7 CEBPB ZNF585B CHD2 OSR2 JUN JUND MXI1 EP300 DUT ENSG00000259488 RPL7AP62 ENSG00000259754 SLC24A5 SEMA6D
GH15J048855 Enhancer 0.9 Ensembl ENCODE 13.8 -524.7 -524701 2.3 CTCF TEAD4 PRDM10 RFX1 MTA2 ZNF24 REST NR2C1 SP1 FOXJ2 DUT ENSG00000259488 SHC4 lnc-CEP152-2 EID1 CEP152
GH15J048570 Enhancer 0.6 Ensembl dbSUPER 13.9 -238.8 -238844 1 SP1 ZNF585B BCL6 RARA HNF4A RXRA DUT ENSG00000259488 FBN1 SHC4 piR-39858-205 ENSG00000274654 lnc-MYEF2-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259488 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259488 Gene

Genomic Locations for ENSG00000259488 Gene
chr15:48,289,906-48,331,856
(GRCh38/hg38)
Size:
41,951 bases
Orientation:
Minus strand
chr15:48,604,550-48,624,053
(GRCh37/hg19)
Size:
19,504 bases
Orientation:
Minus strand

Genomic View for ENSG00000259488 Gene

Genes around ENSG00000259488 on UCSC Golden Path with GeneCards custom track
ENSG00000259488 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259488 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259488 Gene

Proteins for ENSG00000259488 Gene

Post-translational modifications for ENSG00000259488 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259488 Gene

Domains & Families for ENSG00000259488 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259488 Gene

Function for ENSG00000259488 Gene

Phenotypes From GWAS Catalog for ENSG00000259488 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259488 Gene

Localization for ENSG00000259488 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259488 Gene

Pathways & Interactions for ENSG00000259488 Gene

PathCards logo

SuperPathways for ENSG00000259488 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259488 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259488 Gene

Drugs & Compounds for ENSG00000259488 Gene

No Compound Related Data Available

Transcripts for ENSG00000259488 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259488 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003814CA_9606 lncRNA 752 4

Ensembl: ENST00000560323 (view in UCSC) ,

LncBook: HSALNT0220003,

LNCipedia: lnc-FBN1-3:1, lnc-FBN1-3:9,

NONCODE: NONHSAT171563.1,

URS00007657EC_9606 lncRNA 4242 3

Ensembl: ENST00000612262 (view in UCSC) ,

LNCipedia: lnc-FBN1-3:4,

NONCODE: NONHSAT171565.1,

URS000008C73C_9606 lncRNA 577 3

Ensembl: ENST00000559134 (view in UCSC) ,

LNCipedia: lnc-FBN1-3:3,

NONCODE: NONHSAT042342.2,

URS0000D579E1_9606 lncRNA 641 2

LncBook: HSALNT0220010,

LNCipedia: lnc-FBN1-3:6,

URS00009C16F7_9606 lncRNA 498 2

LncBook: HSALNT0220004,

NONCODE: NONHSAT171564.1,

ENSG00000259488 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259488 Gene

No ASD Table

Relevant External Links for ENSG00000259488 Gene

GeneLoc Exon Structure for
ENSG00000259488

No data available for mRNA/cDNA for ENSG00000259488 Gene

Expression for ENSG00000259488 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259488 Gene

genes like me logo Genes that share expression patterns with ENSG00000259488: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259488 Gene

Orthologs for ENSG00000259488 Gene

Evolution for ENSG00000259488 Gene

ENSEMBL:
Gene Tree for ENSG00000259488 (if available)
TreeFam:
Gene Tree for ENSG00000259488 (if available)

No data available for Orthologs for ENSG00000259488 Gene

Paralogs for ENSG00000259488 Gene

No data available for Paralogs for ENSG00000259488 Gene

Variants for ENSG00000259488 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259488 Gene

Disorders for ENSG00000259488 Gene

Additional Disease Information for ENSG00000259488

No disorders were found for ENSG00000259488 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259488 Gene

Publications for ENSG00000259488 Gene

No publications were found for ENSG00000259488 Gene.

No data available for Mastermind for ENSG00000259488 Gene

Products for ENSG00000259488 Gene

Sources for ENSG00000259488 Gene