ENSG00000259488 Gene (RNA Gene)

 

GC15M048312
GIFtS:
9

Aliases for ENSG00000259488 Gene

Subcategory (RNA class) for ENSG00000259488 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259488 Gene

  • Novel Transcript, Antisense To DUT 5
  • NONHSAG016822 92
  • HSALNG0105748 167
  • AC023355.1 5
  • Lnc-FBN1-3 168

External Ids for ENSG00000259488 Gene

Previous GeneCards Identifiers for ENSG00000259488 Gene

  • GC15M048604

Summaries for ENSG00000259488 Gene

GeneCards Summary for ENSG00000259488 Gene

ENSG00000259488 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000259488 include Hepatocellular Carcinoma.

Rfam classification for ENSG00000259488 Gene

Additional gene information for ENSG00000259488 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259488 Gene

Genomics for ENSG00000259488 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259488 Gene

Promoters and enhancers for ENSG00000259488 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH15J048330 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.2 -245 4.6 RXRA FOXK2 HNRNPK ZBTB40 SIN3A NRF1 POLR2G SP1 BCLAF1 GTF2E2 DUT ENSG00000259488 SLC12A1 ENSG00000259235 FBN1 lnc-DUT-1 piR-50444-127
GH15J049154 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 13.7 -823.9 -823945 4.4 RXRA ZBTB40 ZNF217 EP300 SIN3A TCF12 MYC POLR2G SP1 GTF2E2 COPS2 SECISBP2L GALK2 NDUFAF4P1 lnc-SECISBP2L-3 DTWD1 ENSG00000259488 DUT FAM227B
GH15J049043 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.4 -713.5 -713545 4 FOXK2 HNRNPK ZBTB40 ZNF217 EP300 CTCF SIN3A POLR2G SP1 PHF8 SECISBP2L lnc-COPS2-6 SHC4 ENSG00000259488 DTWD1 FAM227B RN7SL577P RF00017-1780 lnc-COPS2-5
GH15J048861 Enhancer 0.8 Ensembl ENCODE 4 -530.7 -530651 1.4 CTCF REST RAD21 TRIM22 SMC3 DEK SPI1 BATF ZNF654 RFX5 SHC4 CEP152 ENSG00000259488 lnc-CEP152-2
GH15J047688 Enhancer 0.7 Ensembl ENCODE 4 +642.6 642644 2 FOS EP300 CEBPB JUN JUND RFX5 TBP TCF7L2 STAT3 SEMA6D ENSG00000259488 HSALNG0105719 L13714-147
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259488 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259488 Gene

Genomic Locations for ENSG00000259488 Gene
chr15:48,312,353-48,331,856
(GRCh38/hg38)
Size:
19,504 bases
Orientation:
Minus strand
chr15:48,604,550-48,624,053
(GRCh37/hg19)
Size:
19,504 bases
Orientation:
Minus strand

Genomic View for ENSG00000259488 Gene

Genes around ENSG00000259488 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259488 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000259488 Gene

Proteins for ENSG00000259488 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000259488 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259488 Gene

Domains & Families for ENSG00000259488 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259488 Gene

Function for ENSG00000259488 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000259488 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259488 Gene

Localization for ENSG00000259488 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259488 Gene

Pathways & Interactions for ENSG00000259488 Gene

PathCards logo

SuperPathways for ENSG00000259488 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259488 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259488 Gene

Drugs & Compounds for ENSG00000259488 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000259488 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000259488 Gene

10 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259488 Gene

No ASD Table

Relevant External Links for ENSG00000259488 Gene

GeneLoc Exon Structure for
ENSG00000259488

Expression for ENSG00000259488 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259488 Gene

mRNA expression in normal human tissues for ENSG00000259488 Gene
mRNA expression by GTEx for ENSG00000259488 Gene
genes like me logo Genes that share expression patterns with ENSG00000259488: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259488 Gene

Orthologs for ENSG00000259488 Gene

Evolution for ENSG00000259488 Gene

ENSEMBL:
Gene Tree for ENSG00000259488 (if available)
TreeFam:
Gene Tree for ENSG00000259488 (if available)

No data available for Orthologs for ENSG00000259488 Gene

Paralogs for ENSG00000259488 Gene

No data available for Paralogs for ENSG00000259488 Gene

Variants for ENSG00000259488 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259488 Gene

Disorders for ENSG00000259488 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000259488 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000259488: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259488 Gene

Publications for ENSG00000259488 Gene

No publications were found for ENSG00000259488 Gene.

No data available for Mastermind for ENSG00000259488 Gene

Products for ENSG00000259488 Gene

Sources for ENSG00000259488 Gene