Aliases for ENSG00000259476 Gene

Subcategory (RNA class) for ENSG00000259476 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259476 Gene

  • Novel Transcript, Sense Intronic To LIPC 5
  • NONHSAG017021.2 91
  • HSALNG0106235 164
  • Lnc-MINDY2-2 165
  • AC018904.2 5

External Ids for ENSG00000259476 Gene

Previous GeneCards Identifiers for ENSG00000259476 Gene

  • GC15P058814

Summaries for ENSG00000259476 Gene

GeneCards Summary for ENSG00000259476 Gene

ENSG00000259476 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259476 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259476 Gene

Genomics for ENSG00000259476 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259476 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J058515 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.8 790 14.2 RNF2 CREB1 GATAD2A ZBTB33 LEF1 IKZF1 RCOR2 ETV6 JUND FOXA1 ENSG00000259476 lnc-ALDH1A2-10 SLTM AQP9 ADAM10 RNF111 LIPC SNORD3P1 LOC101928725 MINDY2
GH15J058498 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -22.0 -22003 2.2 ATF7 MGA CEBPB ZSCAN5C FOS BHLHE40 MAFK HNF4A VEZF1 GLIS1 ALDH1A2 LIPC-AS1 lnc-ALDH1A2-9 ADAM10 LIPC ENSG00000259476
GH15J058510 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -8.9 -8921 4.6 FOXA1 POLR2A CEBPB NFIC GATA3 ZNF843 FEZF1 JUN TOE1 MEIS2 LIPC ADAM10 SLTM ENSG00000225798 FAM81A ENSG00000259476 LIPC-AS1 ALDH1A2
GH15J058504 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -14.8 -14811 4.2 IKZF1 CEBPB RELB CTBP1 RUNX3 FOSL1 EHMT2 NFIC CTCF CEBPG LIPC ADAM10 MYZAP FAM81A ALDH1A2 LIPC-AS1 ENSG00000259476
GH15J058501 Enhancer 0.6 ENCODE dbSUPER 0.4 -19.4 -19434 0.2 ZFHX2 GATA3 EGR2 ALDH1A2 LIPC-AS1 ENSG00000259476 LIPC ADAM10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259476 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259476 Gene

Genomic Locations for ENSG00000259476 Gene
chr15:58,521,311-58,523,371
(GRCh38/hg38)
Size:
2,061 bases
Orientation:
Plus strand
chr15:58,813,510-58,815,570
(GRCh37/hg19)
Size:
2,061 bases
Orientation:
Plus strand

Genomic View for ENSG00000259476 Gene

Genes around ENSG00000259476 on UCSC Golden Path with GeneCards custom track
ENSG00000259476 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259476 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259476 Gene

Proteins for ENSG00000259476 Gene

Post-translational modifications for ENSG00000259476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259476 Gene

Domains & Families for ENSG00000259476 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259476 Gene

Function for ENSG00000259476 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259476 Gene

Localization for ENSG00000259476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259476 Gene

Pathways & Interactions for ENSG00000259476 Gene

PathCards logo

SuperPathways for ENSG00000259476 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259476 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259476 Gene

Drugs & Compounds for ENSG00000259476 Gene

No Compound Related Data Available

Transcripts for ENSG00000259476 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259476 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A5D54_9606 lncRNA 1757 4

Ensembl: ENST00000561202 (view in UCSC) ,

LncBook: HSALNT0220828,

LNCipedia: lnc-MINDY2-2:2,

NONCODE: NONHSAT044112.2,

URS00008B484D_9606 lncRNA 1755 1

LNCipedia: lnc-MINDY2-2:1,

ENSG00000259476 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259476 Gene

No ASD Table

Relevant External Links for ENSG00000259476 Gene

GeneLoc Exon Structure for
ENSG00000259476

No data available for mRNA/cDNA for ENSG00000259476 Gene

Expression for ENSG00000259476 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259476 Gene

Orthologs for ENSG00000259476 Gene

Evolution for ENSG00000259476 Gene

ENSEMBL:
Gene Tree for ENSG00000259476 (if available)
TreeFam:
Gene Tree for ENSG00000259476 (if available)

No data available for Orthologs for ENSG00000259476 Gene

Paralogs for ENSG00000259476 Gene

No data available for Paralogs for ENSG00000259476 Gene

Variants for ENSG00000259476 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259476 Gene

Disorders for ENSG00000259476 Gene

Additional Disease Information for ENSG00000259476

No disorders were found for ENSG00000259476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259476 Gene

Publications for ENSG00000259476 Gene

No publications were found for ENSG00000259476 Gene.

No data available for Mastermind for ENSG00000259476 Gene

Products for ENSG00000259476 Gene

Sources for ENSG00000259476 Gene