Aliases for ENSG00000259475 Gene

Subcategory (RNA class) for ENSG00000259475 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000259475 Gene

  • Novel Transcript, Antisense To IGF1R And SYNM 5
  • Lnc-PGPEP1L-1 168
  • HSALNG0108523 167
  • AC036108.1 5

External Ids for ENSG00000259475 Gene

Previous GeneCards Identifiers for ENSG00000259475 Gene

  • GC15M099497

Summaries for ENSG00000259475 Gene

GeneCards Summary for ENSG00000259475 Gene

ENSG00000259475 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259475 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259475 Gene

Genomics for ENSG00000259475 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259475 Gene

Promoters and enhancers for ENSG00000259475 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J099104 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.3 -286 4.2 EP300 CTCF POLR2G PHF8 TEAD4 GABPA ZBTB26 UBTF REST ZBTB25 SYNM ENSG00000259475 LOC105371016 piR-50207 ENSG00000261616 TTC23 LRRC28
GH15J098950 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +152.0 151984 6.2 SP1 EP300 RELA RCOR1 SKI TRIM22 MXI1 BCL11A NR2F2 TCF12 piR-56625 piR-59970 piR-60515 piR-57323 piR-51428 piR-52458 piR-58950 ENSG00000259475 PGPEP1L piR-38573
GH15J098942 Enhancer 0.9 Ensembl ENCODE dbSUPER 6.1 +162.6 162613 3.6 TCF12 TRIM28 CTBP1 CREB1 CTCF CEBPB GATA3 PKNOX1 POLR2A TBX21 piR-54428 PGPEP1L ENSG00000259475 IGF1R piR-51197
GH15J098965 Enhancer 0.7 Ensembl CraniofacialAtlas 7.1 +139.9 139924 2.2 MXI1 REST ZNF189 POLR2A NFIB JUND TFAP4 PRDM10 PPP1R10 FOXA1 ENSG00000259475 PGPEP1L piR-37095 piR-58297-188
GH15J098946 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 5 +159.3 159323 2.2 ZNF513 ATF4 CREB1 USF2 piR-51092 ENSG00000259475 PGPEP1L IGF1R piR-54428
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259475 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259475 Gene

Genomic Locations for ENSG00000259475 Gene
chr15:98,954,149-99,105,824
(GRCh38/hg38)
Size:
151,676 bases
Orientation:
Minus strand
chr15:99,497,378-99,646,030
(GRCh37/hg19)
Size:
148,653 bases
Orientation:
Minus strand

Genomic View for ENSG00000259475 Gene

Genes around ENSG00000259475 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259475 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259475 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259475 Gene

Proteins for ENSG00000259475 Gene

Post-translational modifications for ENSG00000259475 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259475 Gene

Domains & Families for ENSG00000259475 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259475 Gene

Function for ENSG00000259475 Gene

Phenotypes From GWAS Catalog for ENSG00000259475 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259475 Gene

Localization for ENSG00000259475 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259475 Gene

Pathways & Interactions for ENSG00000259475 Gene

PathCards logo

SuperPathways for ENSG00000259475 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259475 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259475 Gene

Drugs & Compounds for ENSG00000259475 Gene

No Compound Related Data Available

Transcripts for ENSG00000259475 Gene

mRNA/cDNA for ENSG00000259475 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259475 Gene

No ASD Table

Relevant External Links for ENSG00000259475 Gene

GeneLoc Exon Structure for
ENSG00000259475

Expression for ENSG00000259475 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259475 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259475 Gene

This gene is overexpressed in Esophagus - Muscularis (x7.8), Colon - Sigmoid (x5.6), Bladder (x5.1), Esophagus - Gastroesophageal Junction (x4.9), and Muscle - Skeletal (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000259475: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259475 Gene

Orthologs for ENSG00000259475 Gene

Evolution for ENSG00000259475 Gene

ENSEMBL:
Gene Tree for ENSG00000259475 (if available)
TreeFam:
Gene Tree for ENSG00000259475 (if available)

No data available for Orthologs for ENSG00000259475 Gene

Paralogs for ENSG00000259475 Gene

No data available for Paralogs for ENSG00000259475 Gene

Variants for ENSG00000259475 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259475 Gene

Disorders for ENSG00000259475 Gene

No disorders were found for ENSG00000259475 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259475 Gene

Publications for ENSG00000259475 Gene

No publications were found for ENSG00000259475 Gene.

No data available for Mastermind for ENSG00000259475 Gene

Products for ENSG00000259475 Gene

Sources for ENSG00000259475 Gene