Aliases for ENSG00000259474 Gene

Subcategory (RNA class) for ENSG00000259474 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259474 Gene

  • Novel Transcript, Antisense To IREB2 5
  • NONHSAG017563 92
  • HSALNG0107467 167
  • Lnc-CHRNA3-2 168
  • AC027228.1 5

External Ids for ENSG00000259474 Gene

Previous GeneCards Identifiers for ENSG00000259474 Gene

  • GC15M078772

Summaries for ENSG00000259474 Gene

GeneCards Summary for ENSG00000259474 Gene

ENSG00000259474 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259474 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259474 Gene

Genomics for ENSG00000259474 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259474 Gene

Promoters and enhancers for ENSG00000259474 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J078482 Enhancer 0.7 ENCODE 500.7 -0.7 -704 0.2 CTCF TEAD4 REST RAD21 TEAD1 SMC3 ZBTB17 MAFF MAFK RBM22 ENSG00000259474 lnc-CHRNA3-5 IREB2
GH15J078460 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +20.7 20719 3.8 HNF4A SPI1 ZEB2 CEBPA CHRNA5 IREB2 WDR61 CRABP1 PSMA4 ACSBG1 ENSG00000259474 lnc-WDR61-2
GH15J078453 Enhancer 1 ENCODE dbSUPER 0.3 +26.1 26084 3.9 ZNF217 ZSCAN5C TCF12 ZNF10 CUX1 CTBP1 MXI1 OSR2 WT1 NFIC IREB2 PSMA4 WDR61 CRABP1 lnc-WDR61-2 ENSG00000259474
GH15J078447 Enhancer 0.9 ENCODE dbSUPER 0.3 +32.5 32517 3.6 ZNF10 ZIC2 OSR2 NR2F2 WT1 ZNF316 ZBTB17 MAFF MAFK OVOL3 CHRNA5 CRABP1 PSMA4 IREB2 lnc-WDR61-2 ENSG00000259474
GH15J078494 Enhancer 0.6 ENCODE 0.4 -13.5 -13497 0.8 USF1 ZIC2 TOE1 NFIC ZBTB17 POLR2A NFIB MITF GLIS1 ZNF398 IREB2 CRABP1 WDR61 lnc-CHRNA3-5 ENSG00000259474
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259474 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259474 Gene

Genomic Locations for ENSG00000259474 Gene
chr15:78,480,057-78,481,820
(GRCh38/hg38)
Size:
1,764 bases
Orientation:
Minus strand
chr15:78,772,399-78,774,162
(GRCh37/hg19)
Size:
1,764 bases
Orientation:
Minus strand

Genomic View for ENSG00000259474 Gene

Genes around ENSG00000259474 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259474 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259474 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259474 Gene

Proteins for ENSG00000259474 Gene

Post-translational modifications for ENSG00000259474 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259474 Gene

Domains & Families for ENSG00000259474 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259474 Gene

Function for ENSG00000259474 Gene

Phenotypes From GWAS Catalog for ENSG00000259474 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259474 Gene

Localization for ENSG00000259474 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259474 Gene

Pathways & Interactions for ENSG00000259474 Gene

PathCards logo

SuperPathways for ENSG00000259474 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259474 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259474 Gene

Drugs & Compounds for ENSG00000259474 Gene

No Compound Related Data Available

Transcripts for ENSG00000259474 Gene

mRNA/cDNA for ENSG00000259474 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259474 Gene

No ASD Table

Relevant External Links for ENSG00000259474 Gene

GeneLoc Exon Structure for
ENSG00000259474

Expression for ENSG00000259474 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259474 Gene

genes like me logo Genes that share expression patterns with ENSG00000259474: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259474 Gene

Orthologs for ENSG00000259474 Gene

Evolution for ENSG00000259474 Gene

ENSEMBL:
Gene Tree for ENSG00000259474 (if available)
TreeFam:
Gene Tree for ENSG00000259474 (if available)

No data available for Orthologs for ENSG00000259474 Gene

Paralogs for ENSG00000259474 Gene

No data available for Paralogs for ENSG00000259474 Gene

Variants for ENSG00000259474 Gene

Variation tolerance for ENSG00000259474 Gene

Gene Damage Index Score: 0.10; 2.38% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000259474 Gene

Disorders for ENSG00000259474 Gene

No disorders were found for ENSG00000259474 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259474 Gene

Publications for ENSG00000259474 Gene

No publications were found for ENSG00000259474 Gene.

No data available for Mastermind for ENSG00000259474 Gene

Products for ENSG00000259474 Gene

Sources for ENSG00000259474 Gene