Aliases for ENSG00000259407 Gene

Subcategory (RNA class) for ENSG00000259407 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259407 Gene

  • Novel Transcript, Antisense To AKAP13 5
  • NONHSAG017767 92
  • HSALNG0107883 167
  • Lnc-KLHL25-1 168
  • AC021739.2 5

External Ids for ENSG00000259407 Gene

Previous GeneCards Identifiers for ENSG00000259407 Gene

  • GC15M086287

Summaries for ENSG00000259407 Gene

GeneCards Summary for ENSG00000259407 Gene

ENSG00000259407 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259407 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259407 Gene

Genomics for ENSG00000259407 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259407 Gene

Promoters and enhancers for ENSG00000259407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J085748 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 509.1 -0.4 -421 4.9 TEAD4 ZIC2 POLR2A CTCF TCF12 SPI1 ETS1 STAT3 SIN3A RAD21 ENSG00000259407 piR-32741 piR-60259 ENSG00000259276 ENSG00000259762 ENSG00000259416 lnc-AGBL1-7 piR-61351 AKAP13
GH15J085578 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 +168.3 168344 7.9 TCF12 CTCF EP300 RELA MEF2C RCOR1 NFYB MXI1 FOXA2 POLR2A ENSG00000259375 piR-43730 piR-47131 ENSG00000259276 ENSG00000259407 RNU6-1280P ENSG00000259762 ENSG00000259416 NMB AKAP13
GH15J085688 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.2 +58.6 58609 6.8 SIN3A EP300 POLR2A RELA MEF2C BCL11A TCF12 SMC3 ZNF384 MXI1 ENSG00000259276 RNU6-1280P ENSG00000259407 ENSG00000259762 AKAP13 KLHL25 ENSG00000259453 RF00017-1884
GH15J084979 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.8 +768.6 768580 5.4 HNRNPK ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 MYC TCF12 PDE8A SCAND2P WDR73 ZNF592 GOLGA6L4 UBE2Q2P1 GOLGA6L5P SEC11A ENSG00000229212 ENSG00000259407
GH15J085615 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.6 +129.1 129105 11.4 FOS CTCF REST POLR2A RAD21 TRIM22 WT1 ZBTB17 ZNF263 SMC3 ENSG00000259276 RNU6-1280P ENSG00000259407 ENSG00000259762 AKAP13 ENSG00000259416 NMB piR-43107-102 ENSG00000259367
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259407 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259407 Gene

Genomic Locations for ENSG00000259407 Gene
chr15:85,744,109-85,750,281
(GRCh38/hg38)
Size:
6,173 bases
Orientation:
Minus strand
chr15:86,287,340-86,293,512
(GRCh37/hg19)
Size:
6,173 bases
Orientation:
Minus strand

Genomic View for ENSG00000259407 Gene

Genes around ENSG00000259407 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259407 Gene

Proteins for ENSG00000259407 Gene

Post-translational modifications for ENSG00000259407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259407 Gene

Domains & Families for ENSG00000259407 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259407 Gene

Function for ENSG00000259407 Gene

Phenotypes From GWAS Catalog for ENSG00000259407 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259407 Gene

Localization for ENSG00000259407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259407 Gene

Pathways & Interactions for ENSG00000259407 Gene

PathCards logo

SuperPathways for ENSG00000259407 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259407 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259407 Gene

Drugs & Compounds for ENSG00000259407 Gene

No Compound Related Data Available

Transcripts for ENSG00000259407 Gene

mRNA/cDNA for ENSG00000259407 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259407 Gene

No ASD Table

Relevant External Links for ENSG00000259407 Gene

GeneLoc Exon Structure for
ENSG00000259407

Expression for ENSG00000259407 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259407 Gene

genes like me logo Genes that share expression patterns with ENSG00000259407: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259407 Gene

Orthologs for ENSG00000259407 Gene

Evolution for ENSG00000259407 Gene

ENSEMBL:
Gene Tree for ENSG00000259407 (if available)
TreeFam:
Gene Tree for ENSG00000259407 (if available)

No data available for Orthologs for ENSG00000259407 Gene

Paralogs for ENSG00000259407 Gene

No data available for Paralogs for ENSG00000259407 Gene

Variants for ENSG00000259407 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259407 Gene

Disorders for ENSG00000259407 Gene

No disorders were found for ENSG00000259407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259407 Gene

Publications for ENSG00000259407 Gene

No publications were found for ENSG00000259407 Gene.

No data available for Mastermind for ENSG00000259407 Gene

Products for ENSG00000259407 Gene

Sources for ENSG00000259407 Gene