Aliases for ENSG00000259390 Gene

Subcategory (RNA class) for ENSG00000259390 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259390 Gene

  • Novel Transcript 5
  • NONHSAG016552.2 91
  • HSALNG0105141 164
  • Lnc-FSIP1-4 165
  • AC022196.1 5

External Ids for ENSG00000259390 Gene

Previous GeneCards Identifiers for ENSG00000259390 Gene

  • GC15M039804

Summaries for ENSG00000259390 Gene

GeneCards Summary for ENSG00000259390 Gene

ENSG00000259390 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259390 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259390 Gene

Genomics for ENSG00000259390 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259390 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J039509 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.6 8632 3.4 ZNF512 IKZF1 PRDM1 JUND FOS FOSL1 BCOR BHLHE40 CTCF MCM7 THBS1 ENSG00000259390 LOC105370784 HSALNG0105164 ENSG00000259345 RASGRP1
GH15J039508 Enhancer 0.3 Ensembl 0.4 +11.2 11226 0.5 EGR1 ZFHX2 THBS1 HSALNG0105164 ENSG00000259390 ENSG00000259345 RASGRP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259390 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259390 Gene

Genomic Locations for ENSG00000259390 Gene
chr15:39,512,335-39,519,954
(GRCh38/hg38)
Size:
7,620 bases
Orientation:
Minus strand
chr15:39,804,607-39,812,055
(GRCh37/hg19)
Size:
7,449 bases
Orientation:
Minus strand

Genomic View for ENSG00000259390 Gene

Genes around ENSG00000259390 on UCSC Golden Path with GeneCards custom track
ENSG00000259390 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259390 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259390 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259390 Gene

Proteins for ENSG00000259390 Gene

Post-translational modifications for ENSG00000259390 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259390 Gene

Domains & Families for ENSG00000259390 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259390 Gene

Function for ENSG00000259390 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259390 Gene

Localization for ENSG00000259390 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259390 Gene

Pathways & Interactions for ENSG00000259390 Gene

PathCards logo

SuperPathways for ENSG00000259390 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259390 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259390 Gene

Drugs & Compounds for ENSG00000259390 Gene

No Compound Related Data Available

Transcripts for ENSG00000259390 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259390 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB8806_9606 lncRNA 721 1

Ensembl: ENST00000558818 (view in UCSC) ,

URS0000EF36DA_9606 lncRNA 684 1

Ensembl: ENST00000559570 (view in UCSC) ,

URS00008BF59C_9606 lncRNA 552 3

LncBook: HSALNT0218860,

LNCipedia: lnc-FSIP1-4:2,

NONCODE: NONHSAT041757.2,

URS000058AC05_9606 lncRNA 462 3

LncBook: HSALNT0218862,

LNCipedia: lnc-FSIP1-4:4,

NONCODE: NONHSAT041758.2,

URS00008B72E9_9606 lncRNA 397 3

LncBook: HSALNT0218863,

LNCipedia: lnc-FSIP1-4:1,

NONCODE: NONHSAT041759.2,

ENSG00000259390 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259390 Gene

No ASD Table

Relevant External Links for ENSG00000259390 Gene

GeneLoc Exon Structure for
ENSG00000259390

No data available for mRNA/cDNA for ENSG00000259390 Gene

Expression for ENSG00000259390 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259390 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259390 Gene

This gene is overexpressed in Testis (x52.3).
genes like me logo Genes that share expression patterns with ENSG00000259390: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259390 Gene

Orthologs for ENSG00000259390 Gene

Evolution for ENSG00000259390 Gene

ENSEMBL:
Gene Tree for ENSG00000259390 (if available)
TreeFam:
Gene Tree for ENSG00000259390 (if available)

No data available for Orthologs for ENSG00000259390 Gene

Paralogs for ENSG00000259390 Gene

No data available for Paralogs for ENSG00000259390 Gene

Variants for ENSG00000259390 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259390 Gene

Disorders for ENSG00000259390 Gene

Additional Disease Information for ENSG00000259390

No disorders were found for ENSG00000259390 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259390 Gene

Publications for ENSG00000259390 Gene

No publications were found for ENSG00000259390 Gene.

No data available for Mastermind for ENSG00000259390 Gene

Products for ENSG00000259390 Gene

Sources for ENSG00000259390 Gene