Aliases for ENSG00000259380 Gene

Subcategory (RNA class) for ENSG00000259380 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259380 Gene

  • Novel Transcript 5
  • HSALNG0105106 167
  • NONHSAG016543 92
  • Lnc-RASGRP1-3 168
  • AC087473.1 5

External Ids for ENSG00000259380 Gene

Previous GeneCards Identifiers for ENSG00000259380 Gene

  • GC15M038433

Summaries for ENSG00000259380 Gene

GeneCards Summary for ENSG00000259380 Gene

ENSG00000259380 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259380 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259380 Gene

Genomics for ENSG00000259380 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259380 Gene

Promoters and enhancers for ENSG00000259380 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J038226 Enhancer 0.8 Ensembl ENCODE 500.7 -0.1 -104 1.2 JUND FOS NFIC FOSL2 CEBPB FOSL1 EP300 PRDM6 HMG20A POLR2A ENSG00000259380 SPRED1
GH15J038228 Enhancer 0.7 Ensembl ENCODE 0.7 -2.6 -2571 2.7 GATA3 GATA2 ZMYM3 HLF ESRRA FOS STAT3 ENSG00000259380 SPRED1
GH15J038216 Enhancer 0.9 Ensembl ENCODE 0.4 +9.1 9097 2.4 TCF12 FOXA1 EP300 TEAD1 FOXA2 CEBPG FOS FOSL2 CEBPB ZFHX2 SPRED1 ENSG00000259380 piR-45012-188
GH15J038205 Enhancer 0.6 Ensembl ENCODE 0.4 +19.7 19697 4 FOS SPI1 JUNB ATF2 HLF EBF1 SPRED1 ENSG00000259380 piR-45012-188
GH15J038212 Enhancer 0.6 Ensembl ENCODE 0.4 +14.3 14297 3.2 TAL1 KDM1A CBFA2T3 SPRED1 ENSG00000259380 piR-45012-188
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259380 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259380 Gene

Genomic Locations for ENSG00000259380 Gene
chr15:38,139,595-38,226,897
(GRCh38/hg38)
Size:
87,303 bases
Orientation:
Minus strand
chr15:38,431,796-38,519,088
(GRCh37/hg19)
Size:
87,293 bases
Orientation:
Minus strand

Genomic View for ENSG00000259380 Gene

Genes around ENSG00000259380 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259380 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259380 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259380 Gene

Proteins for ENSG00000259380 Gene

Post-translational modifications for ENSG00000259380 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259380 Gene

Domains & Families for ENSG00000259380 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259380 Gene

Function for ENSG00000259380 Gene

Phenotypes From GWAS Catalog for ENSG00000259380 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259380 Gene

Localization for ENSG00000259380 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259380 Gene

Pathways & Interactions for ENSG00000259380 Gene

PathCards logo

SuperPathways for ENSG00000259380 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259380 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259380 Gene

Drugs & Compounds for ENSG00000259380 Gene

No Compound Related Data Available

Transcripts for ENSG00000259380 Gene

mRNA/cDNA for ENSG00000259380 Gene

9 RNACentral transcripts :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259380 Gene

No ASD Table

Relevant External Links for ENSG00000259380 Gene

GeneLoc Exon Structure for
ENSG00000259380

Expression for ENSG00000259380 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259380 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259380 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.5), Brain - Substantia nigra (x8.4), Brain - Hippocampus (x5.2), Brain - Amygdala (x5.1), and Brain - Putamen (basal ganglia) (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000259380: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259380 Gene

Orthologs for ENSG00000259380 Gene

Evolution for ENSG00000259380 Gene

ENSEMBL:
Gene Tree for ENSG00000259380 (if available)
TreeFam:
Gene Tree for ENSG00000259380 (if available)

No data available for Orthologs for ENSG00000259380 Gene

Paralogs for ENSG00000259380 Gene

No data available for Paralogs for ENSG00000259380 Gene

Variants for ENSG00000259380 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259380 Gene

Disorders for ENSG00000259380 Gene

No disorders were found for ENSG00000259380 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259380 Gene

Publications for ENSG00000259380 Gene

No publications were found for ENSG00000259380 Gene.

No data available for Mastermind for ENSG00000259380 Gene

Products for ENSG00000259380 Gene

Sources for ENSG00000259380 Gene