Aliases for ENSG00000259365 Gene

Subcategory (RNA class) for ENSG00000259365 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259365 Gene

  • Novel Transcript 5
  • NONHSAG018112.2 91
  • HSALNG0108613 164
  • Lnc-LRRK1-1 165
  • AC019254.2 5

External Ids for ENSG00000259365 Gene

Previous GeneCards Identifiers for ENSG00000259365 Gene

  • GC15P101656

Summaries for ENSG00000259365 Gene

GeneCards Summary for ENSG00000259365 Gene

ENSG00000259365 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259365 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259365 Gene

Genomics for ENSG00000259365 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259365 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J101112 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.6 -1602 6.8 ZIC2 EP300 ZBTB44 EGR1 CEBPB ZFHX2 BCOR CEBPG ZSCAN16 CBX1 ENSG00000259365 CHSY1 lnc-CHSY1-2 LOC105371026 LRRK1
GH15J101120 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +8.3 8261 8.9 SP1 PRDM10 ZNF512 IKZF1 KDM1A ZNF692 STAT3 PHF21A RELA ZIC2 CHSY1 ENSG00000259381 WASH3P PRKXP1 ASB7 LINS1 SNRPA1 LRRK1 ENSG00000259365 LOC105371026
GH15J101148 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +33.3 33298 4.2 CREB1 RFX1 KDM1A BACH1 ZNF143 REST IKZF2 EP300 MNT EED LOC105371026 CHSY1 MG828537 ENSG00000259365 LRRK1
GH15J101139 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.4 +22.6 22597 1 SP1 ZNF692 ZNF143 IKZF2 EED DPF2 RELB RUNX3 GATAD2B BCLAF1 LOC105371026 ENSG00000259365 CHSY1 LRRK1
GH15J101118 Enhancer 0.5 Ensembl ENCODE 0.7 +2.3 2310 0.2 PKNOX1 CTCF ENSG00000259365 LOC105371026 CHSY1 LRRK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259365 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259365 Gene

Genomic Locations for ENSG00000259365 Gene
chr15:101,116,603-101,117,546
(GRCh38/hg38)
Size:
944 bases
Orientation:
Plus strand
chr15:101,656,808-101,657,751
(GRCh37/hg19)
Size:
944 bases
Orientation:
Plus strand

Genomic View for ENSG00000259365 Gene

Genes around ENSG00000259365 on UCSC Golden Path with GeneCards custom track
ENSG00000259365 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259365 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259365 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259365 Gene

Proteins for ENSG00000259365 Gene

Post-translational modifications for ENSG00000259365 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259365 Gene

Domains & Families for ENSG00000259365 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259365 Gene

Function for ENSG00000259365 Gene

Phenotypes From GWAS Catalog for ENSG00000259365 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259365 Gene

Localization for ENSG00000259365 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259365 Gene

Pathways & Interactions for ENSG00000259365 Gene

PathCards logo

SuperPathways for ENSG00000259365 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259365 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259365 Gene

Drugs & Compounds for ENSG00000259365 Gene

No Compound Related Data Available

Transcripts for ENSG00000259365 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259365 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004312C6_9606 lncRNA 556 4

Ensembl: ENST00000560938 (view in UCSC) ,

LncBook: HSALNT0225979,

LNCipedia: lnc-LRRK1-1:1,

NONCODE: NONHSAT051152.2,

ENSG00000259365 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259365 Gene

No ASD Table

Relevant External Links for ENSG00000259365 Gene

GeneLoc Exon Structure for
ENSG00000259365

No data available for mRNA/cDNA for ENSG00000259365 Gene

Expression for ENSG00000259365 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259365 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259365 Gene

This gene is overexpressed in Testis (x39.9) and Whole Blood (x6.2).
genes like me logo Genes that share expression patterns with ENSG00000259365: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259365 Gene

Orthologs for ENSG00000259365 Gene

Evolution for ENSG00000259365 Gene

ENSEMBL:
Gene Tree for ENSG00000259365 (if available)
TreeFam:
Gene Tree for ENSG00000259365 (if available)

No data available for Orthologs for ENSG00000259365 Gene

Paralogs for ENSG00000259365 Gene

No data available for Paralogs for ENSG00000259365 Gene

Variants for ENSG00000259365 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259365 Gene

Disorders for ENSG00000259365 Gene

No disorders were found for ENSG00000259365 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259365 Gene

Publications for ENSG00000259365 Gene

No publications were found for ENSG00000259365 Gene.

No data available for Mastermind for ENSG00000259365 Gene

Products for ENSG00000259365 Gene

Sources for ENSG00000259365 Gene