Aliases for ENSG00000259356 Gene

Subcategory (RNA class) for ENSG00000259356 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259356 Gene

  • Novel Transcript, Antisense To ADAMTS17 5
  • NONHSAG018087.2 91
  • HSALNG0108573 164
  • Lnc-MEF2A-3 165
  • AC022710.1 5

External Ids for ENSG00000259356 Gene

Previous GeneCards Identifiers for ENSG00000259356 Gene

  • GC15P100666

Summaries for ENSG00000259356 Gene

GeneCards Summary for ENSG00000259356 Gene

ENSG00000259356 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259356 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259356 Gene

Genomics for ENSG00000259356 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259356 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J100125 Enhancer 0.5 Ensembl ENCODE 606.3 -0.2 -206 1.8 SP1 NR2F2 ENSG00000259356 ENSG00000254744 LOC107984740 ADAMTS17 LYSMD4
GH15J100110 Enhancer 1 FANTOM5 ENCODE 0.4 -14.5 -14519 2.2 PRDM10 JUND ZIC2 PATZ1 GABPA ZNF600 ATF7 MGA SMARCC1 CEBPB LOC107984740 ADAMTS17 ENSG00000259356 LYSMD4
GH15J100131 Enhancer 0.8 ENCODE 0.4 +5.7 5703 0.9 GATAD2A CTCF REST SP1 GABPA MNT NRF1 MGA CBX3 RNF2 LYSMD4 ENSG00000259356 piR-58788-005 ADAMTS17
GH15J100112 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 -11.9 -11871 2.5 PRDM10 RXRB MNT TCF7L2 GLIS1 SP1 ADAMTS17 LOC107984740 ENSG00000259356 LYSMD4
GH15J100141 Enhancer 0.5 Ensembl ENCODE CraniofacialAtlas 0.4 +15.4 15402 0.9 ENSG00000254744 piR-58788-005 ENSG00000259356 ADAMTS17 LYSMD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259356 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259356 Gene

Genomic Locations for ENSG00000259356 Gene
chr15:100,126,106-100,129,743
(GRCh38/hg38)
Size:
3,638 bases
Orientation:
Plus strand
chr15:100,666,311-100,669,948
(GRCh37/hg19)
Size:
3,638 bases
Orientation:
Plus strand

Genomic View for ENSG00000259356 Gene

Genes around ENSG00000259356 on UCSC Golden Path with GeneCards custom track
ENSG00000259356 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259356 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259356 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259356 Gene

Proteins for ENSG00000259356 Gene

Post-translational modifications for ENSG00000259356 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259356 Gene

Domains & Families for ENSG00000259356 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259356 Gene

Function for ENSG00000259356 Gene

Phenotypes From GWAS Catalog for ENSG00000259356 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259356 Gene

Localization for ENSG00000259356 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259356 Gene

Pathways & Interactions for ENSG00000259356 Gene

PathCards logo

SuperPathways for ENSG00000259356 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259356 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259356 Gene

Drugs & Compounds for ENSG00000259356 Gene

No Compound Related Data Available

Transcripts for ENSG00000259356 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259356 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F1D7E_9606 lncRNA 1781 4

Ensembl: ENST00000560128 (view in UCSC) ,

LncBook: HSALNT0225833,

LNCipedia: lnc-MEF2A-3:2,

NONCODE: NONHSAT051083.2,

ENSG00000259356 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259356 Gene

No ASD Table

Relevant External Links for ENSG00000259356 Gene

GeneLoc Exon Structure for
ENSG00000259356

No data available for mRNA/cDNA for ENSG00000259356 Gene

Expression for ENSG00000259356 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259356 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259356 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.5), Fallopian Tube (x5.0), Brain - Putamen (basal ganglia) (x4.7), and Brain - Caudate (basal ganglia) (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000259356: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259356 Gene

Orthologs for ENSG00000259356 Gene

Evolution for ENSG00000259356 Gene

ENSEMBL:
Gene Tree for ENSG00000259356 (if available)
TreeFam:
Gene Tree for ENSG00000259356 (if available)

No data available for Orthologs for ENSG00000259356 Gene

Paralogs for ENSG00000259356 Gene

No data available for Paralogs for ENSG00000259356 Gene

Variants for ENSG00000259356 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259356 Gene

Disorders for ENSG00000259356 Gene

Additional Disease Information for ENSG00000259356

No disorders were found for ENSG00000259356 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259356 Gene

Publications for ENSG00000259356 Gene

No publications were found for ENSG00000259356 Gene.

No data available for Mastermind for ENSG00000259356 Gene

Products for ENSG00000259356 Gene

Sources for ENSG00000259356 Gene