Aliases for ENSG00000259296 Gene

Subcategory (RNA class) for ENSG00000259296 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259296 Gene

  • Novel Transcript, Antisense To SCG3 5
  • NONHSAG016900.2 91
  • HSALNG0105926 164
  • Lnc-LYSMD2-1 165
  • AC020892.2 5

External Ids for ENSG00000259296 Gene

Previous GeneCards Identifiers for ENSG00000259296 Gene

  • GC15M052000
  • GC15M052393
  • GC15M052674
  • GC15M057661
  • GC15M057772
  • GC15M057809
  • GC15M059768
  • GC15M054040
  • GC15M054920
  • GC15M055361
  • GC15M055808
  • GC15M056244
  • GC15M056691
  • GC15M057132
  • GC15M057552

Summaries for ENSG00000259296 Gene

GeneCards Summary for ENSG00000259296 Gene

ENSG00000259296 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259296 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259296 Gene

Genomics for ENSG00000259296 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259296 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J051718 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -0.9 -863 4.6 REST JUND RXRB SP1 ZNF316 FOXA2 ATF3 FOSL1 MAFG CEBPG ENSG00000259296 LYSMD2 SCG3 TMOD2 TMOD3 DMXL2
GH15J051728 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -14.5 -14505 10.1 SP1 CREB1 ZNF629 REST RFX1 POLR2A BACH1 LARP7 PRDM1 ZNF143 LYSMD2 DMXL2 SCG3 TMOD3 MAPK6 TMOD2 ENSG00000259296
GH15J051707 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.3 11251 2.4 FOXA1 FOXA2 SPI1 ZBTB33 CHAMP1 ZNF362 DMXL2 SCG3 LYSMD2 TMOD2 MAPK6 TMOD3 ENSG00000259241 ENSG00000259296
GH15J051725 Enhancer 0.9 ENCODE 0.4 -7.7 -7674 2.7 CREB1 ZNF629 POLR2A ZHX2 JUND FOXA1 ZIC2 PKNOX1 PATZ1 REST TMOD2 LYSMD2 SCG3 TMOD3 ENSG00000259296
GH15J051706 Enhancer 0.8 Ensembl ENCODE 0.4 +13.1 13075 0.8 NCOR1 STAT5A TAL1 ZNF589 TCF12 ATF1 KLF16 IKZF1 ATF2 CHD2 SCG3 TMOD2 LYSMD2 MAPK6 ENSG00000259241 ENSG00000259296
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259296 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259296 Gene

Genomic Locations for ENSG00000259296 Gene
chr15:51,695,353-51,719,454
(GRCh38/hg38)
Size:
24,102 bases
Orientation:
Minus strand
chr15:52,000,192-52,007,417
(GRCh37/hg19)
Size:
7,226 bases
Orientation:
Minus strand

Genomic View for ENSG00000259296 Gene

Genes around ENSG00000259296 on UCSC Golden Path with GeneCards custom track
ENSG00000259296 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259296 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259296 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259296 Gene

Proteins for ENSG00000259296 Gene

Post-translational modifications for ENSG00000259296 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259296 Gene

Domains & Families for ENSG00000259296 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259296 Gene

Function for ENSG00000259296 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259296 Gene

Localization for ENSG00000259296 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259296 Gene

Pathways & Interactions for ENSG00000259296 Gene

PathCards logo

SuperPathways for ENSG00000259296 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259296 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259296 Gene

Drugs & Compounds for ENSG00000259296 Gene

No Compound Related Data Available

Transcripts for ENSG00000259296 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259296 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000017CF9F_9606 lncRNA 387 4

Ensembl: ENST00000557891 (view in UCSC) ,

LncBook: HSALNT0220297,

LNCipedia: lnc-LYSMD2-1:1,

NONCODE: NONHSAT043876.2,

URS00008BFF69_9606 lncRNA 276 3

LncBook: HSALNT0220298,

LNCipedia: lnc-LYSMD2-1:2,

NONCODE: NONHSAT043877.2,

URS00009B86BB_9606 lncRNA 844 1

NONCODE: NONHSAT171588.1,

ENSG00000259296 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259296 Gene

No ASD Table

Relevant External Links for ENSG00000259296 Gene

GeneLoc Exon Structure for
ENSG00000259296

No data available for mRNA/cDNA for ENSG00000259296 Gene

Expression for ENSG00000259296 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259296 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259296 Gene

This gene is overexpressed in Testis (x26.3), Brain - Cerebellum (x6.5), and Brain - Cerebellar Hemisphere (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000259296: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259296 Gene

Orthologs for ENSG00000259296 Gene

Evolution for ENSG00000259296 Gene

ENSEMBL:
Gene Tree for ENSG00000259296 (if available)
TreeFam:
Gene Tree for ENSG00000259296 (if available)

No data available for Orthologs for ENSG00000259296 Gene

Paralogs for ENSG00000259296 Gene

No data available for Paralogs for ENSG00000259296 Gene

Variants for ENSG00000259296 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259296 Gene

Disorders for ENSG00000259296 Gene

No disorders were found for ENSG00000259296 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259296 Gene

Publications for ENSG00000259296 Gene

No publications were found for ENSG00000259296 Gene.

No data available for Mastermind for ENSG00000259296 Gene

Products for ENSG00000259296 Gene

Sources for ENSG00000259296 Gene