Aliases for ENSG00000259294 Gene

Subcategory (RNA class) for ENSG00000259294 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000259294 Gene

  • Novel Transcript, Antisense To CUX1 5
  • NONHSAG048411.2 91
  • Lnc-MYL10-2 165
  • AC005096.1 5

External Ids for ENSG00000259294 Gene

Previous GeneCards Identifiers for ENSG00000259294 Gene

  • GC07M101465

Summaries for ENSG00000259294 Gene

GeneCards Summary for ENSG00000259294 Gene

ENSG00000259294 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259294 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259294 Gene

Genomics for ENSG00000259294 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259294 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J101822 Enhancer 0.6 ENCODE 600.7 +1.1 1107 1.3 CEBPG SCRT2 ZBTB44 CEBPB ZBTB17 SCRT1 NFIC ZNF189 PRDM6 MEIS2 ENSG00000259294 CUX1 SH2B2
GH07J101825 Enhancer 0.5 ENCODE 600.7 -0.7 -707 0.1 CTCF IKZF1 POLR2A ZNF600 RAD21 SP1 ENSG00000259294 CUX1 piR-43107-276 SH2B2
GH07J101813 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +8.1 8128 6 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A PRDM10 TFE3 IKZF1 KDM1A CTCF CUX1 HSALNG0060135 SRRT RPL7AP39 TRIP6 PRKRIP1 EPHB4 POLR2J2 ENSG00000259294 SH2B2
GH07J101855 Enhancer 1.7 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 -32.2 -32152 3.4 SP1 HNRNPL CREB1 GATAD2A ZBTB33 PRDM10 REST ZNF629 TFE3 LEF1 SRRT SH2B2 CUX1 PRKRIP1 piR-43107-276 ENSG00000259294
GH07J101861 Enhancer 1.1 ENCODE dbSUPER 0.3 -37.8 -37843 1.5 GATAD2A ZBTB33 LEF1 IKZF1 ZNF692 PKNOX1 RXRB PATZ1 BRD9 HDAC1 CUX1 SRRT RPL7AP39 UPK3BL1 RASA4B piR-43107-276 ENSG00000259294 SH2B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259294 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259294 Gene

Genomic Locations for ENSG00000259294 Gene
chr7:101,822,247-101,824,729
(GRCh38/hg38)
Size:
2,483 bases
Orientation:
Minus strand
chr7:101,465,527-101,468,009
(GRCh37/hg19)
Size:
2,483 bases
Orientation:
Minus strand

Genomic View for ENSG00000259294 Gene

Genes around ENSG00000259294 on UCSC Golden Path with GeneCards custom track
ENSG00000259294 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259294 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259294 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259294 Gene

Proteins for ENSG00000259294 Gene

Post-translational modifications for ENSG00000259294 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259294 Gene

Domains & Families for ENSG00000259294 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259294 Gene

Function for ENSG00000259294 Gene

Phenotypes From GWAS Catalog for ENSG00000259294 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259294 Gene

Localization for ENSG00000259294 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259294 Gene

Pathways & Interactions for ENSG00000259294 Gene

PathCards logo

SuperPathways for ENSG00000259294 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259294 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259294 Gene

Drugs & Compounds for ENSG00000259294 Gene

No Compound Related Data Available

Transcripts for ENSG00000259294 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259294 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C9B23_9606 lncRNA 622 3

Ensembl: ENST00000560499 (view in UCSC) ,

LNCipedia: lnc-MYL10-2:1,

NONCODE: NONHSAT122473.2,

ENSG00000259294 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259294 Gene

No ASD Table

Relevant External Links for ENSG00000259294 Gene

GeneLoc Exon Structure for
ENSG00000259294

No data available for mRNA/cDNA for ENSG00000259294 Gene

Expression for ENSG00000259294 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259294 Gene

genes like me logo Genes that share expression patterns with ENSG00000259294: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259294 Gene

Orthologs for ENSG00000259294 Gene

Evolution for ENSG00000259294 Gene

ENSEMBL:
Gene Tree for ENSG00000259294 (if available)
TreeFam:
Gene Tree for ENSG00000259294 (if available)

No data available for Orthologs for ENSG00000259294 Gene

Paralogs for ENSG00000259294 Gene

No data available for Paralogs for ENSG00000259294 Gene

Variants for ENSG00000259294 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259294 Gene

Disorders for ENSG00000259294 Gene

No disorders were found for ENSG00000259294 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259294 Gene

Publications for ENSG00000259294 Gene

No publications were found for ENSG00000259294 Gene.

No data available for Mastermind for ENSG00000259294 Gene

Products for ENSG00000259294 Gene

Sources for ENSG00000259294 Gene