Aliases for ENSG00000259283 Gene

Subcategory (RNA class) for ENSG00000259283 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000259283 Gene

  • Novel Transcript, Antisense To IRX6 5
  • NONHSAG019504 92
  • AC109462.1 5
  • Lnc-CES1-3 168

External Ids for ENSG00000259283 Gene

Previous GeneCards Identifiers for ENSG00000259283 Gene

  • GC16M055293

Summaries for ENSG00000259283 Gene

GeneCards Summary for ENSG00000259283 Gene

ENSG00000259283 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259283 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259283 Gene

Genomics for ENSG00000259283 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259283 Gene

Promoters and enhancers for ENSG00000259283 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J055333 Enhancer 0.6 Ensembl 500.7 -0.4 -377 1.3 ZIC2 ZNF316 MAFF CEBPG FOS MAFK NFE2 NFE2L1 CTCF MAFG ENSG00000263207 ENSG00000259283 IRX6 lnc-CES1-4 RPL31P56
GH16J055323 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 +9.1 9087 2.2 CTCF ZBTB10 ZBTB26 ATF2 ZNF341 POLR2A CREB1 ZBTB17 ZNF524 ZBTB11 IRX6 ENSG00000283423 ENSG00000259283 ENSG00000263207
GH16J055330 Enhancer 0.4 Ensembl 0.7 +2.7 2687 0.2 HDAC2 SIN3A RNF2 EZH2 SUZ12 ENSG00000263207 ENSG00000259283 IRX6
GH16J055296 Enhancer 0.7 Ensembl 0.3 +35.9 35946 1.3 ZSCAN5C TRIM28 ATF2 OSR2 CREB1 FOS ZFHX2 ZNF513 ZBTB48 ZNF335 IRX6 RN7SL841P lnc-CES1-5 ENSG00000283423 ENSG00000259283
GH16J055302 Enhancer 0.6 Ensembl ENCODE 0.3 +30.8 30832 1.1 USF1 ZNF335 ZNF398 EGR2 USF2 ZNF770 IRX6 lnc-CES1-5 RN7SL841P ENSG00000283423 ENSG00000259283
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259283 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259283 Gene

Genomic Locations for ENSG00000259283 Gene
chr16:55,259,969-55,333,588
(GRCh38/hg38)
Size:
73,620 bases
Orientation:
Minus strand
chr16:55,293,881-55,367,500
(GRCh37/hg19)
Size:
73,620 bases
Orientation:
Minus strand

Genomic View for ENSG00000259283 Gene

Genes around ENSG00000259283 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259283 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259283 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259283 Gene

Proteins for ENSG00000259283 Gene

Post-translational modifications for ENSG00000259283 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259283 Gene

Domains & Families for ENSG00000259283 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259283 Gene

Function for ENSG00000259283 Gene

Phenotypes From GWAS Catalog for ENSG00000259283 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259283 Gene

Localization for ENSG00000259283 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259283 Gene

Pathways & Interactions for ENSG00000259283 Gene

PathCards logo

SuperPathways for ENSG00000259283 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259283 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259283 Gene

Drugs & Compounds for ENSG00000259283 Gene

No Compound Related Data Available

Transcripts for ENSG00000259283 Gene

mRNA/cDNA for ENSG00000259283 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259283 Gene

No ASD Table

Relevant External Links for ENSG00000259283 Gene

GeneLoc Exon Structure for
ENSG00000259283

Expression for ENSG00000259283 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259283 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259283 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x24.0) and Skin - Sun Exposed (Lower leg) (x7.6).
genes like me logo Genes that share expression patterns with ENSG00000259283: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259283 Gene

Orthologs for ENSG00000259283 Gene

Evolution for ENSG00000259283 Gene

ENSEMBL:
Gene Tree for ENSG00000259283 (if available)
TreeFam:
Gene Tree for ENSG00000259283 (if available)

No data available for Orthologs for ENSG00000259283 Gene

Paralogs for ENSG00000259283 Gene

No data available for Paralogs for ENSG00000259283 Gene

Variants for ENSG00000259283 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259283 Gene

Disorders for ENSG00000259283 Gene

No disorders were found for ENSG00000259283 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259283 Gene

Publications for ENSG00000259283 Gene

No publications were found for ENSG00000259283 Gene.

No data available for Mastermind for ENSG00000259283 Gene

Products for ENSG00000259283 Gene

Sources for ENSG00000259283 Gene