Aliases for ENSG00000259268 Gene

Subcategory (RNA class) for ENSG00000259268 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000259268 Gene

  • Novel Transcript 5
  • NONHSAG017131.2 91
  • AC007950.1 5
  • Lnc-CA12-1 165

External Ids for ENSG00000259268 Gene

Previous GeneCards Identifiers for ENSG00000259268 Gene

  • GC15M063748

Summaries for ENSG00000259268 Gene

GeneCards Summary for ENSG00000259268 Gene

ENSG00000259268 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259268 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259268 Gene

Genomics for ENSG00000259268 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259268 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J063469 Enhancer 0.6 ENCODE dbSUPER 600.7 -0.1 -71 0.1 USF2 RAD51 ESRRA CREM ENSG00000259268 RF00017-1809 USP3 FBXL22 CA12
GH15J063467 Promoter 0.3 Ensembl 600.7 +1.5 1455 0.6 ENSG00000259268 USP3 FBXL22 CA12 piR-31470-192
GH15J063478 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 5.6 -10.7 -10683 4 SP1 CREB1 GATAD2A ZNF629 RFX1 LEF1 ZNF692 BACH1 STAT3 ZNF143 lnc-CA12-3 lnc-USP3-4 USP3 LACTB HERC1 FBXL22 ENSG00000259268 CA12 SNX1 RAB8B
GH15J063482 Enhancer 1 ENCODE dbSUPER 5.5 -14.9 -14932 3.5 LARP7 ZIC2 TCF12 IKZF2 ZNF740 TRIM22 ZNF600 PKNOX1 CEBPA EED USP3 FBXL22 ENSG00000259268 LINC02568 CA12 SNX1 lnc-USP3-3 lnc-USP3-4
GH15J063466 Enhancer 1.1 ENCODE dbSUPER 0.7 +2.4 2427 1 GATAD2A CTCF TFE3 NFKBIZ RCOR2 ZNF143 PKNOX1 RXRB PATZ1 REST CA12 CSNK1G1 USP3 FBXL22 TRIP4 APH1B ENSG00000259268 piR-31470-192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259268 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259268 Gene

Genomic Locations for ENSG00000259268 Gene
chr15:63,456,294-63,469,356
(GRCh38/hg38)
Size:
13,063 bases
Orientation:
Minus strand
chr15:63,748,493-63,761,550
(GRCh37/hg19)
Size:
13,058 bases
Orientation:
Minus strand

Genomic View for ENSG00000259268 Gene

Genes around ENSG00000259268 on UCSC Golden Path with GeneCards custom track
ENSG00000259268 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259268 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259268 Gene

Proteins for ENSG00000259268 Gene

Post-translational modifications for ENSG00000259268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259268 Gene

Domains & Families for ENSG00000259268 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259268 Gene

Function for ENSG00000259268 Gene

Phenotypes From GWAS Catalog for ENSG00000259268 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259268 Gene

Localization for ENSG00000259268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259268 Gene

Pathways & Interactions for ENSG00000259268 Gene

PathCards logo

SuperPathways for ENSG00000259268 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259268 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259268 Gene

Drugs & Compounds for ENSG00000259268 Gene

No Compound Related Data Available

Transcripts for ENSG00000259268 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259268 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEC190_9606 lncRNA 620 1

Ensembl: ENST00000560465 (view in UCSC) ,

URS000055CD7F_9606 lncRNA 615 2

LNCipedia: lnc-CA12-1:1,

NONCODE: NONHSAT046610.2,

ENSG00000259268 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259268 Gene

No ASD Table

Relevant External Links for ENSG00000259268 Gene

GeneLoc Exon Structure for
ENSG00000259268

No data available for mRNA/cDNA for ENSG00000259268 Gene

Expression for ENSG00000259268 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259268 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259268 Gene

This gene is overexpressed in Whole Blood (x40.2).
genes like me logo Genes that share expression patterns with ENSG00000259268: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259268 Gene

Orthologs for ENSG00000259268 Gene

Evolution for ENSG00000259268 Gene

ENSEMBL:
Gene Tree for ENSG00000259268 (if available)
TreeFam:
Gene Tree for ENSG00000259268 (if available)

No data available for Orthologs for ENSG00000259268 Gene

Paralogs for ENSG00000259268 Gene

No data available for Paralogs for ENSG00000259268 Gene

Variants for ENSG00000259268 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259268 Gene

Disorders for ENSG00000259268 Gene

Additional Disease Information for ENSG00000259268

No disorders were found for ENSG00000259268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259268 Gene

Publications for ENSG00000259268 Gene

No publications were found for ENSG00000259268 Gene.

No data available for Mastermind for ENSG00000259268 Gene

Products for ENSG00000259268 Gene

Sources for ENSG00000259268 Gene