Aliases for ENSG00000259242 Gene

Subcategory (RNA class) for ENSG00000259242 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259242 Gene

  • Novel Transcript, Antisense To PBX4 5
  • NONHSAG025191 92
  • HSALNG0124742 167
  • Lnc-CILP2-1 168
  • AC002306.1 5

External Ids for ENSG00000259242 Gene

Previous GeneCards Identifiers for ENSG00000259242 Gene

  • GC19P019716

Summaries for ENSG00000259242 Gene

GeneCards Summary for ENSG00000259242 Gene

ENSG00000259242 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259242 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259242 Gene

Genomics for ENSG00000259242 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259242 Gene

Promoters and enhancers for ENSG00000259242 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J019605 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 500.7 +0.1 140 2 EP300 CTBP1 SIN3A FOS CEBPB POLR2A JUN FOSL1 NR3C1 ELF1 ENSG00000259242 LPAR2 GMIP ATP13A1 GATAD2A PBX4
GH19J019604 Promoter 0.3 Ensembl 500.7 -1.4 -1449 0.6 ENSG00000259242 LPAR2 NDUFA13 ATP13A1 GMIP PBX4 PHF5CP
GH19J019617 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +11.9 11945 2.6 NRF1 SP1 ZBTB10 ZBTB26 RFX1 RCOR1 TRIM25 NFYB POLR2A CTBP1 PBX4 lnc-ZNF101-1 ATP13A1 LPAR2 ENSG00000259242 lnc-LPAR2-1
GH19J019594 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -7.4 -7358 8.9 ZNF217 SP1 ZIC2 CLOCK TCF7 RFX1 RELA MEF2C CTBP1 TRIM22 ATP13A1 LPAR2 UPF1 GATAD2A NR2C2AP ZNF90 GMIP MAU2 ENSG00000267481 BNIP3P16
GH19J019589 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -15.1 -15058 3.2 SP1 JUND FOS RFX1 RELA EP300 POLR2A BCL11A SIN3A DEK GATAD2A PBX4 GMIP LPAR2 ATP13A1 RFXANK ZNF14 MAU2 ZNF506 PHF5CP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259242 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259242 Gene

Genomic Locations for ENSG00000259242 Gene
chr19:19,606,350-19,608,660
(GRCh38/hg38)
Size:
2,311 bases
Orientation:
Plus strand
chr19:19,717,159-19,719,469
(GRCh37/hg19)
Size:
2,311 bases
Orientation:
Plus strand

Genomic View for ENSG00000259242 Gene

Genes around ENSG00000259242 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259242 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259242 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259242 Gene

Proteins for ENSG00000259242 Gene

Post-translational modifications for ENSG00000259242 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259242 Gene

Domains & Families for ENSG00000259242 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259242 Gene

Function for ENSG00000259242 Gene

Phenotypes From GWAS Catalog for ENSG00000259242 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259242 Gene

Localization for ENSG00000259242 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259242 Gene

Pathways & Interactions for ENSG00000259242 Gene

PathCards logo

SuperPathways for ENSG00000259242 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259242 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259242 Gene

Drugs & Compounds for ENSG00000259242 Gene

No Compound Related Data Available

Transcripts for ENSG00000259242 Gene

mRNA/cDNA for ENSG00000259242 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259242 Gene

No ASD Table

Relevant External Links for ENSG00000259242 Gene

GeneLoc Exon Structure for
ENSG00000259242

Expression for ENSG00000259242 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259242 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259242 Gene

This gene is overexpressed in Thyroid (x11.9).
genes like me logo Genes that share expression patterns with ENSG00000259242: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259242 Gene

Orthologs for ENSG00000259242 Gene

Evolution for ENSG00000259242 Gene

ENSEMBL:
Gene Tree for ENSG00000259242 (if available)
TreeFam:
Gene Tree for ENSG00000259242 (if available)

No data available for Orthologs for ENSG00000259242 Gene

Paralogs for ENSG00000259242 Gene

No data available for Paralogs for ENSG00000259242 Gene

Variants for ENSG00000259242 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259242 Gene

Disorders for ENSG00000259242 Gene

No disorders were found for ENSG00000259242 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259242 Gene

Publications for ENSG00000259242 Gene

No publications were found for ENSG00000259242 Gene.

No data available for Mastermind for ENSG00000259242 Gene

Products for ENSG00000259242 Gene

Sources for ENSG00000259242 Gene