Aliases for ENSG00000259188 Gene

Subcategory (RNA class) for ENSG00000259188 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000259188 Gene

  • Novel Transcript, Antisense To ATP8B4 5
  • NONHSAG016855 92
  • HSALNG0105854 167
  • Lnc-DTWD1-7 168
  • AC025040.1 5

External Ids for ENSG00000259188 Gene

Previous GeneCards Identifiers for ENSG00000259188 Gene

  • GC15P050171

Summaries for ENSG00000259188 Gene

GeneCards Summary for ENSG00000259188 Gene

ENSG00000259188 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259188 Gene

Genomics for ENSG00000259188 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000259188 Gene

Promoters and enhancers for ENSG00000259188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J049876 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 510.9 +0.4 449 3.2 CTCF USF1 TEAD4 RAD21 SMC3 NR2F2 SIN3A ATF3 CEBPB ZNF143 ENSG00000259188 LOC102724587 ATP8B4 FGF7 DTWD1 lnc-FAM227B-1
GH15J049875 Enhancer 0.6 Ensembl dbSUPER 500.7 -1.7 -1676 0.4 CTCF PAX5 RAD21 ZNF444 ENSG00000259188 LOC102724587 lnc-DTWD1-2 ATP8B4
GH15J049831 Enhancer 1 Ensembl ENCODE dbSUPER 9.3 -45.2 -45208 1.8 CTCF TCF12 FOS REST CUX1 RAD21 FOSL2 NFE2 NR3C1 EZH2 DTWD1 FAM227B ENSG00000259188 FGF7 piR-47211-224 lnc-DTWD1-6
GH15J049815 Enhancer 0.9 FANTOM5 Ensembl ENCODE 9.3 -61.1 -61083 1.3 EZH2 BHLHE40 MYC MAX USF2 RUNX3 ENSG00000259188 FGF7 lnc-DTWD1-6 piR-47211-224
GH15J049862 Enhancer 0.8 Ensembl ENCODE dbSUPER 9.6 -13.1 -13054 2.8 FOS CEBPB STAT3 EP300 PAX5 NFRKB POLR2A ENSG00000259188 FGF7 DTWD1 lnc-DTWD1-2 LOC102724587 ATP8B4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000259188 Gene

Genomic Locations for ENSG00000259188 Gene
chr15:49,877,299-49,883,525
(GRCh38/hg38)
Size:
6,227 bases
Orientation:
Plus strand
chr15:50,171,801-50,175,722
(GRCh37/hg19)
Size:
3,922 bases
Orientation:
Plus strand

Genomic View for ENSG00000259188 Gene

Genes around ENSG00000259188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000259188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259188 Gene

Proteins for ENSG00000259188 Gene

Post-translational modifications for ENSG00000259188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259188 Gene

Domains & Families for ENSG00000259188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259188 Gene

Function for ENSG00000259188 Gene

Phenotypes From GWAS Catalog for ENSG00000259188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259188 Gene

Localization for ENSG00000259188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259188 Gene

Pathways & Interactions for ENSG00000259188 Gene

PathCards logo

SuperPathways for ENSG00000259188 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000259188 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259188 Gene

Drugs & Compounds for ENSG00000259188 Gene

No Compound Related Data Available

Transcripts for ENSG00000259188 Gene

mRNA/cDNA for ENSG00000259188 Gene

8 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
6 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259188 Gene

No ASD Table

Relevant External Links for ENSG00000259188 Gene

GeneLoc Exon Structure for
ENSG00000259188

Expression for ENSG00000259188 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259188 Gene

mRNA expression in normal human tissues for ENSG00000259188 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259188 Gene

This gene is overexpressed in Testis (x21.4).
genes like me logo Genes that share expression patterns with ENSG00000259188: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259188 Gene

Orthologs for ENSG00000259188 Gene

Evolution for ENSG00000259188 Gene

ENSEMBL:
Gene Tree for ENSG00000259188 (if available)
TreeFam:
Gene Tree for ENSG00000259188 (if available)

No data available for Orthologs for ENSG00000259188 Gene

Paralogs for ENSG00000259188 Gene

No data available for Paralogs for ENSG00000259188 Gene

Variants for ENSG00000259188 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259188 Gene

Disorders for ENSG00000259188 Gene

No disorders were found for ENSG00000259188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259188 Gene

Publications for ENSG00000259188 Gene

No publications were found for ENSG00000259188 Gene.

No data available for Mastermind for ENSG00000259188 Gene

Products for ENSG00000259188 Gene

Sources for ENSG00000259188 Gene